Difference between revisions of "RXN-13417"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7155 PWY-7155] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3041 TAX-30...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-302 RXN0-302] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-C-methyl-D-erythritol 2,4-c...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7155 PWY-7155] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-302 RXN0-302] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3041 TAX-3041]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** 7-dehydroporiferasterol biosynthesis
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** 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/4.6.1.12 EC-4.6.1.12]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''4''' reactions found over '''10''' reactions in the full pathway
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* With identifiers:
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* [[CYCLOARTENOL-SYNTHASE-RXN]]
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** 1 [[2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET]][c] '''=>''' 1 [[2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE]][c] '''+''' 1 [[CMP]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Ec-00_010980]]
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** 1 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] '''=>''' 1 2-C-methyl-D-erythritol-2,4-cyclodiphosphate[c] '''+''' 1 CMP[c]
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*** [[Ec-07_006170]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-esiliculosus_genome]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-aragem]]
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* Gene: [[Ec-25_000990]]
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* [[CYCLOEUCALENOL-CYCLOISOMERASE-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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** 1 associated gene(s):
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*** Assignment: EC-NUMBER
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*** [[Ec-05_000840]]
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== Pathways  ==
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** 1 reconstruction source(s) associated:
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* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
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*** [[annotation-esiliculosus_genome]]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[RXN-13892]]
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* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
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** 1 associated gene(s):
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** '''9''' reactions found over '''9''' reactions in the full pathway
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*** [[Ec-01_003780]]
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== Reconstruction information  ==
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** 1 reconstruction source(s) associated:
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* Category: [[annotation]]
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*** [[annotation-esiliculosus_genome]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[RXN-4021]]
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*** Tool: [[pathwaytools]]
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** 1 associated gene(s):
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*** [[Ec-27_003950]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13891 RXN-13891]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13893 RXN-13893]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13894 RXN-13894]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13895 RXN-13895]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13896 RXN-13896]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13897 RXN-13897]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-3041}}
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* RHEA:
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{{#set: common name=7-dehydroporiferasterol biosynthesis}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23864 23864]
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{{#set: reaction found=4}}
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* LIGAND-RXN:
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{{#set: total reaction=10}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05637 R05637]
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{{#set: completion rate=40.0}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase}}
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{{#set: ec number=EC-4.6.1.12}}
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{{#set: gene associated=Ec-25_000990}}
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{{#set: in pathway=NONMEVIPP-PWY|PWY-7560}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:27, 21 March 2018

Reaction RXN0-302

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • NONMEVIPP-PWY, methylerythritol phosphate pathway I: NONMEVIPP-PWY
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7560, methylerythritol phosphate pathway II: PWY-7560
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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