Difference between revisions of "PWY-6470"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=3-DEHYDRO-SHIKIMATE 3-DEHYDRO-SHIKIMATE] == * smiles: ** C([O-])(=O)C1(=CC(=O)C(O)C(O)C1) * inc...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12178 RXN-12178] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycosyl hydrolase, family...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=3-DEHYDRO-SHIKIMATE 3-DEHYDRO-SHIKIMATE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12178 RXN-12178] ==
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* smiles:
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* direction:
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** C([O-])(=O)C1(=CC(=O)C(O)C(O)C1)
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=SLWWJZMPHJJOPH-PHDIDXHHSA-M
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* common name:
 
* common name:
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** 3-dehydroshikimate
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** Glycosyl hydrolase, family 88
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* molecular weight:
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* ec number:
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** 171.129   
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** [http://enzyme.expasy.org/EC/3.2.1.179 EC-3.2.1.179]
 
* Synonym(s):
 
* Synonym(s):
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** 3-dehydroshikimic acid
 
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** 5-dehydroshikimic acid
 
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** 5-dehydroshikimate
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[SHIKIMATE-5-DEHYDROGENASE-RXN]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[CPD-36]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-13122]][c] '''+''' 1 [[N-acetyl-D-galactosamine]][c]
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* [[RXN-7968]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine[c] '''+''' 1 H2O[c] '''=>''' 1 4-deoxy-L-threo-hex-4-enopyranuronate[c] '''+''' 1 N-acetyl-D-galactosamine[c]
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* [[3-DEHYDROQUINATE-DEHYDRATASE-RXN]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-02_002970]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-02_002980]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY-7646]], dermatan sulfate degradation I (bacterial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7646 PWY-7646]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6572]], chondroitin sulfate degradation I (bacterial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6572 PWY-6572]
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** '''1''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5460360 5460360]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31654 31654]
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* CHEMSPIDER:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.chemspider.com/Chemical-Structure.4573915.html 4573915]
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{{#set: common name=Glycosyl hydrolase, family 88}}
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* CHEBI:
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{{#set: ec number=EC-3.2.1.179}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=16630 16630]
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{{#set: gene associated=Ec-02_002970|Ec-02_002980}}
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* BIGG : 40260
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{{#set: in pathway=PWY-7646|PWY-6572}}
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* LIGAND-CPD:
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{{#set: reconstruction category=annotation}}
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** [http://www.genome.jp/dbget-bin/www_bget?C02637 C02637]
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: smiles=C([O-])(=O)C1(=CC(=O)C(O)C(O)C1)}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: inchi key=InChIKey=SLWWJZMPHJJOPH-PHDIDXHHSA-M}}
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{{#set: common name=3-dehydroshikimate}}
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{{#set: molecular weight=171.129    }}
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{{#set: common name=3-dehydroshikimic acid|5-dehydroshikimic acid|5-dehydroshikimate}}
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{{#set: consumed by=SHIKIMATE-5-DEHYDROGENASE-RXN}}
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{{#set: produced by=RXN-7968}}
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{{#set: reversible reaction associated=3-DEHYDROQUINATE-DEHYDRATASE-RXN}}
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Revision as of 13:29, 21 March 2018

Reaction RXN-12178

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Glycosyl hydrolase, family 88
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine[c] + 1 H2O[c] => 1 4-deoxy-L-threo-hex-4-enopyranuronate[c] + 1 N-acetyl-D-galactosamine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7646, dermatan sulfate degradation I (bacterial): PWY-7646
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-6572, chondroitin sulfate degradation I (bacterial): PWY-6572
    • 1 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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