Difference between revisions of "METHYLCROTONYL-COA-CARBOXYLASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FUMHYDR-RXN FUMHYDR-RXN] == * direction: ** REVERSIBLE * common name: ** Fumarate lyase, N-terminal...")
(Created page with "Category:Gene == Gene Ec-09_000640 == * left end position: ** 827832 * transcription direction: ** NEGATIVE * right end position: ** 850282 * centisome position: ** 14.748...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FUMHYDR-RXN FUMHYDR-RXN] ==
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== Gene Ec-09_000640 ==
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* direction:
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* left end position:
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** REVERSIBLE
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** 827832
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* common name:
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* transcription direction:
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** Fumarate lyase, N-terminal
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** NEGATIVE
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** fumarate hydratase
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* right end position:
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* ec number:
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** 850282
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** [http://enzyme.expasy.org/EC/4.2.1.2 EC-4.2.1.2]
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* centisome position:
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** 14.748054   
 
* Synonym(s):
 
* Synonym(s):
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** fumarate hydration
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** Esi_0146_0024
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** malate dehydration
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** Esi0146_0024
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[GLUTAMINESYN-RXN]]
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** 1 [[MAL]][c] '''<=>''' 1 [[FUM]][c] '''+''' 1 [[WATER]][c]
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* With common name(s):
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** 1 (S)-malate[c] '''<=>''' 1 fumarate[c] '''+''' 1 H2O[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-23_003460]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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** [[pantograph]]-[[aragem]]
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* [[Ec-25_001360]]
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** ESILICULOSUS_GENOME
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***GO-TERM
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== Pathways  ==
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* [[PWY-561]], superpathway of glyoxylate cycle and fatty acid degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-561 PWY-561]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
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** '''6''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
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** '''6''' reactions found over '''12''' reactions in the full pathway
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* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
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** '''10''' reactions found over '''12''' reactions in the full pathway
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* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
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** '''10''' reactions found over '''12''' reactions in the full pathway
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* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
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** '''8''' reactions found over '''16''' reactions in the full pathway
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* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
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** '''11''' reactions found over '''18''' reactions in the full pathway
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* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[P108-PWY]], pyruvate fermentation to propanoate I: [http://metacyc.org/META/NEW-IMAGE?object=P108-PWY P108-PWY]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
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** '''9''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: go-term
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== Pathways associated ==
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* [[GLNSYN-PWY]]
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* [[PWY-5675]]
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* [[PWY-381]]
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* [[PWY-6549]]
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* [[PWY-6964]]
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* [[PWY-6963]]
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* [[PWY490-3]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=827832}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12460 12460]
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{{#set: transcription direction=NEGATIVE}}
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* PIR:
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{{#set: right end position=850282}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47692 A47692]
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{{#set: centisome position=14.748054    }}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49760 A49760]
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{{#set: common name=Esi_0146_0024|Esi0146_0024}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A64377 A64377]
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{{#set: reaction associated=GLUTAMINESYN-RXN}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81281 A81281]
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{{#set: pathway associated=GLNSYN-PWY|PWY-5675|PWY-381|PWY-6549|PWY-6964|PWY-6963|PWY490-3}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81807 A81807]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B44511 B44511]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B81862 B81862]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64461 E64461]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64685 E64685]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70896 H70896]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H71462 H71462]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4293 JC4293]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4982 JC4982]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PA0062 PA0062]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40448 S40448]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76348 S76348]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T00433 T00433]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07374 T07374]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T41265 T41265]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T43727 T43727]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T45269 T45269]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFBSC8 UFBSC8]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFBYM UFBYM]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFEC UFEC]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFECAQ UFECAQ]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFHUM UFHUM]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFPG UFPG]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFRT UFRT]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01082 R01082]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/Q04718 Q04718]
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** [http://www.uniprot.org/uniprot/Q58034 Q58034]
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** [http://www.uniprot.org/uniprot/O69294 O69294]
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** [http://www.uniprot.org/uniprot/Q9JTE3 Q9JTE3]
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** [http://www.uniprot.org/uniprot/P14407 P14407]
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** [http://www.uniprot.org/uniprot/Q9JTR0 Q9JTR0]
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** [http://www.uniprot.org/uniprot/Q58690 Q58690]
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** [http://www.uniprot.org/uniprot/O25883 O25883]
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** [http://www.uniprot.org/uniprot/O53446 O53446]
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** [http://www.uniprot.org/uniprot/O84863 O84863]
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** [http://www.uniprot.org/uniprot/Q51404 Q51404]
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** [http://www.uniprot.org/uniprot/Q7M4Z3 Q7M4Z3]
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** [http://www.uniprot.org/uniprot/P39461 P39461]
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** [http://www.uniprot.org/uniprot/Q55674 Q55674]
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** [http://www.uniprot.org/uniprot/P93033 P93033]
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** [http://www.uniprot.org/uniprot/Q43180 Q43180]
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** [http://www.uniprot.org/uniprot/O94552 O94552]
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** [http://www.uniprot.org/uniprot/O66271 O66271]
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** [http://www.uniprot.org/uniprot/Q60022 Q60022]
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** [http://www.uniprot.org/uniprot/P07343 P07343]
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** [http://www.uniprot.org/uniprot/P08417 P08417]
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** [http://www.uniprot.org/uniprot/P05042 P05042]
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** [http://www.uniprot.org/uniprot/P0AC33 P0AC33]
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** [http://www.uniprot.org/uniprot/P10173 P10173]
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** [http://www.uniprot.org/uniprot/P14408 P14408]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=Fumarate lyase, N-terminal}}
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{{#set: common name=fumarate hydratase}}
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{{#set: ec number=EC-4.2.1.2}}
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{{#set: common name=fumarate hydration|malate dehydration}}
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{{#set: gene associated=Ec-23_003460|Ec-25_001360}}
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{{#set: in pathway=PWY-561|PWY-5913|P42-PWY|PWY-7384|PWY-5392|P23-PWY|P105-PWY|PWY-6969|FERMENTATION-PWY|PWY-6728|REDCITCYC|PWY-7254|P108-PWY|PWY-5690|PWY66-398|TCA}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 13:31, 21 March 2018

Gene Ec-09_000640

  • left end position:
    • 827832
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 850282
  • centisome position:
    • 14.748054
  • Synonym(s):
    • Esi_0146_0024
    • Esi0146_0024

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=METHYLCROTONYL-COA-CARBOXYLASE-RXN&oldid=19265"