Difference between revisions of "Ec-25 000050"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-14443 CPD-14443] == * smiles: ** C1(C(O)CC(=NC1C([O-])=O)C([O-])=O) * inchi key: ** InChIKe...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.2-RXN 5.99.1.2-RXN] == * direction: ** REVERSIBLE * common name: ** DNA topoisomerase ** DNA...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-14443 CPD-14443] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.2-RXN 5.99.1.2-RXN] ==
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* smiles:
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* direction:
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** C1(C(O)CC(=NC1C([O-])=O)C([O-])=O)
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** REVERSIBLE
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* inchi key:
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−
** InChIKey=DVTPRYHENFBCII-IMJSIDKUSA-L
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* common name:
 
* common name:
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** (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
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** DNA topoisomerase
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* molecular weight:
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** DNA topoisomerase type I
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** 185.136   
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** Spo11/DNA topoisomerase VI subunit A
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* ec number:
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** [http://enzyme.expasy.org/EC/5.99.1.2 EC-5.99.1.2]
 
* Synonym(s):
 
* Synonym(s):
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** (4S)-4-hydroxy-2,3,4,5-tetrahydro-(2S)-dipicolinate
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-14014]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[Negatively-super-coiled-DNAs]][c] '''<=>''' 1 [[Relaxed-DNAs]][c]
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* [[DIHYDRODIPICSYN-RXN]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 a negatively supercoiled DNA[c] '''<=>''' 1 a relaxed DNA[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-24_003570]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-01_011320]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-12_007130]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-15_001600]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-01_011310]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-08_003340]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-03_004560]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-12_007190]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-03_001530]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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== Pathways  ==
 +
== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* UNIPROT:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=70678847 70678847]
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** [http://www.uniprot.org/uniprot/Q7M0H8 Q7M0H8]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/Q07050 Q07050]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=67139 67139]
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** [http://www.uniprot.org/uniprot/Q9JWZ5 Q9JWZ5]
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{{#set: smiles=C1(C(O)CC(=NC1C([O-])=O)C([O-])=O)}}
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** [http://www.uniprot.org/uniprot/Q59046 Q59046]
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{{#set: inchi key=InChIKey=DVTPRYHENFBCII-IMJSIDKUSA-L}}
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** [http://www.uniprot.org/uniprot/Q9PLZ2 Q9PLZ2]
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{{#set: common name=(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate}}
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** [http://www.uniprot.org/uniprot/P47368 P47368]
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{{#set: molecular weight=185.136    }}
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** [http://www.uniprot.org/uniprot/Q9CG80 Q9CG80]
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{{#set: common name=(4S)-4-hydroxy-2,3,4,5-tetrahydro-(2S)-dipicolinate}}
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** [http://www.uniprot.org/uniprot/P43704 P43704]
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{{#set: consumed by=RXN-14014}}
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** [http://www.uniprot.org/uniprot/P43012 P43012]
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{{#set: produced by=DIHYDRODIPICSYN-RXN}}
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** [http://www.uniprot.org/uniprot/P0A620 P0A620]
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** [http://www.uniprot.org/uniprot/P04786 P04786]
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** [http://www.uniprot.org/uniprot/P13099 P13099]
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** [http://www.uniprot.org/uniprot/P06612 P06612]
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** [http://www.uniprot.org/uniprot/P11387 P11387]
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** [http://www.uniprot.org/uniprot/P07799 P07799]
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** [http://www.uniprot.org/uniprot/P93119 P93119]
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** [http://www.uniprot.org/uniprot/O13463 O13463]
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** [http://www.uniprot.org/uniprot/Q94705 Q94705]
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** [http://www.uniprot.org/uniprot/Q04750 Q04750]
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** [http://www.uniprot.org/uniprot/P14294 P14294]
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** [http://www.uniprot.org/uniprot/P30181 P30181]
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** [http://www.uniprot.org/uniprot/P34185 P34185]
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** [http://www.uniprot.org/uniprot/P30189 P30189]
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** [http://www.uniprot.org/uniprot/P40114 P40114]
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** [http://www.uniprot.org/uniprot/P41511 P41511]
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** [http://www.uniprot.org/uniprot/Q8I3Z9 Q8I3Z9]
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** [http://www.uniprot.org/uniprot/Q26024 Q26024]
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** [http://www.uniprot.org/uniprot/Q27529 Q27529]
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** [http://www.uniprot.org/uniprot/P41512 P41512]
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** [http://www.uniprot.org/uniprot/O24307 O24307]
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** [http://www.uniprot.org/uniprot/P71196 P71196]
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** [http://www.uniprot.org/uniprot/O70157 O70157]
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** [http://www.uniprot.org/uniprot/O60126 O60126]
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** [http://www.uniprot.org/uniprot/O61660 O61660]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=DNA topoisomerase}}
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{{#set: common name=DNA topoisomerase type I}}
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{{#set: common name=Spo11/DNA topoisomerase VI subunit A}}
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{{#set: ec number=EC-5.99.1.2}}
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{{#set: gene associated=Ec-24_003570|Ec-01_011320|Ec-12_007130|Ec-15_001600|Ec-01_011310|Ec-08_003340|Ec-03_004560|Ec-12_007190|Ec-03_001530}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:33, 21 March 2018

Reaction 5.99.1.2-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • DNA topoisomerase
    • DNA topoisomerase type I
    • Spo11/DNA topoisomerase VI subunit A
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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