Difference between revisions of "Ec-06 006760"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.113-RXN 2.1.1.113-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** site-specific DNA-m...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-224756 TAX-22...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.113-RXN 2.1.1.113-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-224756 TAX-224756]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183939 TAX-183939]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183925 TAX-183925]
 
* common name:
 
* common name:
−
** site-specific DNA-methyltransferase (cytosine-N4-specific)
+
** incomplete reductive TCA cycle
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.1.1.113 EC-2.1.1.113]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** citric acid cycle variant
 +
** tricarboxylic acid cycle variant
 +
** TCA cycle variation I
 +
** incomplete reductive tricarboxylic acid cycle
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''5''' reactions found over '''7''' reactions in the full pathway
−
** 1 [[DNA-Cytosines]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DNA-N4-Methylcytosine]][c] '''+''' 1 [[PROTON]][c]
+
* [[FUMHYDR-RXN]]
−
* With common name(s):
+
** 2 associated gene(s):
−
** 1 a cytosine in DNA[c] '''+''' 1 S-adenosyl-L-methionine[c] '''=>''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 an N4-methylcytosine in DNA[c] '''+''' 1 H+[c]
+
*** [[Ec-25_001360]]
−
 
+
*** [[Ec-23_003460]]
−
== Genes associated with this reaction  ==
+
** 2 reconstruction source(s) associated:
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[annotation-esiliculosus_genome]]
−
* [[Ec-04_006290]]
+
*** [[orthology-aragem]]
−
** ESILICULOSUS_GENOME
+
* [[MALATE-DEH-RXN]]
−
***GO-TERM
+
** 2 associated gene(s):
−
* [[Ec-09_001730]]
+
*** [[Ec-10_006200]]
−
** ESILICULOSUS_GENOME
+
*** [[Ec-02_003100]]
−
***GO-TERM
+
** 2 reconstruction source(s) associated:
−
* [[Ec-00_002200]]
+
*** [[annotation-esiliculosus_genome]]
−
** ESILICULOSUS_GENOME
+
*** [[orthology-aragem]]
−
***GO-TERM
+
* [[PYRUFLAVREDUCT-RXN]]
−
== Pathways  ==
+
** 3 associated gene(s):
−
== Reconstruction information  ==
+
*** [[Ec-18_003420]]
−
* Category: [[annotation]]
+
*** [[Ec-15_004230]]
−
** Source: [[annotation-esiliculosus_genome]]
+
*** [[Ec-23_002710]]
−
*** Tool: [[pathwaytools]]
+
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[PYRUVATE-CARBOXYLASE-RXN]]
 +
** 1 associated gene(s):
 +
*** [[Ec-03_001890]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[SUCCCOASYN-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Ec-10_000030]]
 +
*** [[Ec-02_001020]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
*** [[orthology-aragem]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=2-OXOGLUTARATE-SYNTHASE-RXN 2-OXOGLUTARATE-SYNTHASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=R601-RXN R601-RXN]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: taxonomic range=TAX-224756}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03003 R03003]
+
{{#set: taxonomic range=TAX-183939}}
−
* UNIPROT:
+
{{#set: taxonomic range=TAX-183925}}
−
** [http://www.uniprot.org/uniprot/Q04845 Q04845]
+
{{#set: common name=incomplete reductive TCA cycle}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: common name=citric acid cycle variant|tricarboxylic acid cycle variant|TCA cycle variation I|incomplete reductive tricarboxylic acid cycle}}
−
{{#set: common name=site-specific DNA-methyltransferase (cytosine-N4-specific)}}
+
{{#set: reaction found=5}}
−
{{#set: ec number=EC-2.1.1.113}}
+
{{#set: total reaction=7}}
−
{{#set: gene associated=Ec-04_006290|Ec-09_001730|Ec-00_002200}}
+
{{#set: completion rate=71.0}}
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Revision as of 14:36, 21 March 2018

Pathway P42-PWY

  • taxonomic range:
  • common name:
    • incomplete reductive TCA cycle
  • Synonym(s):
    • citric acid cycle variant
    • tricarboxylic acid cycle variant
    • TCA cycle variation I
    • incomplete reductive tricarboxylic acid cycle

Reaction(s) found

5 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-06_006760&oldid=20027"