Difference between revisions of "RXN-13602"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10039 RXN-10039] == * direction: ** LEFT-TO-RIGHT * common name: ** O-phosphoseryl-tRNA(Sec) se...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]...")
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[[Category:Reaction]]
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[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10039 RXN-10039] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415] ==
* direction:
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* taxonomic range:
** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
** O-phosphoseryl-tRNA(Sec) selenium transferase
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** superpathway of heme biosynthesis from uroporphyrinogen-III
* ec number:
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** [http://enzyme.expasy.org/EC/2.9.1.2 EC-2.9.1.2]
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* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
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== Reaction(s) found ==
* With identifiers:
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'''5''' reactions found over '''6''' reactions in the full pathway
** 1 [[O-phospho-L-seryl-tRNASecs]][c] '''+''' 1 [[SEPO3]][c] '''+''' 1 [[WATER]][c] '''=>''' 2 [[Pi]][c] '''+''' 1 [[Charged-SEC-tRNAs]][c]
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* [[HEMESYN2-PWY]]
* With common name(s):
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** 0 associated gene:
** 1 an O-phospho-L-seryl-[tRNASec][c] '''+''' 1 selenophosphate[c] '''+''' 1 H2O[c] '''=>''' 2 phosphate[c] '''+''' 1 an L-selenocysteinyl-[tRNAsec][c]
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* [[PROTOHEMEFERROCHELAT-RXN]]
 
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** 1 associated gene(s):
== Genes associated with this reaction  ==
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*** [[Ec-01_005360]]
Genes have been associated with this reaction based on different elements listed below.
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** 2 reconstruction source(s) associated:
* [[Ec-14_006440]]
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*** [[annotation-esiliculosus_genome]]
** ESILICULOSUS_GENOME
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*** [[orthology-aragem]]
***AUTOMATED-NAME-MATCH
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* [[PROTOPORGENOXI-RXN]]
== Pathways  ==
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** 1 associated gene(s):
* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6281 PWY-6281]
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*** [[Ec-25_003100]]
** '''4''' reactions found over '''4''' reactions in the full pathway
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** 2 reconstruction source(s) associated:
== Reconstruction information  ==
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*** [[annotation-esiliculosus_genome]]
* Category: [[annotation]]
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*** [[orthology-aragem]]
** Source: [[annotation-esiliculosus_genome]]
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* [[RXN0-1461]]
*** Tool: [[pathwaytools]]
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** 2 associated gene(s):
 +
*** [[Ec-08_001470]]
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*** [[Ec-19_005390]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[UROGENDECARBOX-RXN]]
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** 3 associated gene(s):
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*** [[Ec-24_000620]]
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*** [[Ec-01_000360]]
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*** [[Ec-24_000650]]
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** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
* LIGAND-RXN:
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* ECOCYC:
** [http://www.genome.jp/dbget-bin/www_bget?R08224 R08224]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2}}
{{#set: common name=O-phosphoseryl-tRNA(Sec) selenium transferase}}
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{{#set: common name=superpathway of heme biosynthesis from uroporphyrinogen-III}}
{{#set: ec number=EC-2.9.1.2}}
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{{#set: reaction found=5}}
{{#set: gene associated=Ec-14_006440}}
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{{#set: total reaction=6}}
{{#set: in pathway=PWY-6281}}
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{{#set: completion rate=83.0}}
{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 13:36, 21 March 2018

Pathway PWY0-1415

  • taxonomic range:
  • common name:
    • superpathway of heme biosynthesis from uroporphyrinogen-III
  • Synonym(s):

Reaction(s) found

5 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links