Difference between revisions of "DETHIOBIOTIN-SYN-RXN"

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(Created page with "Category:Gene == Gene Ec-21_006220 == * left end position: ** 7084129 * transcription direction: ** NEGATIVE * right end position: ** 7089373 * centisome position: ** 95.9...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14971 RXN-14971] == * direction: ** LEFT-TO-RIGHT * common name: ** Succinate dehydrogenase/fum...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-21_006220 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14971 RXN-14971] ==
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* left end position:
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* direction:
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** 7084129
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
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* right end position:
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** SDH1, succinate dehydrogenase subunit 1
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** 7089373
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** SDH3, succinate dehydrogenase subunit 3
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* centisome position:
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** SDH2, succinate dehydrogenase subunit 2
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** 95.98936   
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** SDH4, succinate dehydrogenase subunit 4
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* ec number:
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** [http://enzyme.expasy.org/EC/1.3.5.1 EC-1.3.5.1]
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0014_0172
 
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** Esi0014_0172
 
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** GGT
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[GAMMA-GLUTAMYLTRANSFERASE-RXN]]
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* With identifiers:
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** esiliculosus_genome
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** 1 [[ETR-Quinones]][c] '''+''' 1 [[SUC]][c] '''=>''' 1 [[ETR-Quinols]][c] '''+''' 1 [[FUM]][c]
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***ec-number
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* With common name(s):
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* [[RXN-6601]]
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** 1 an electron-transfer quinone[c] '''+''' 1 succinate[c] '''=>''' 1 an electron-transfer quinol[c] '''+''' 1 fumarate[c]
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** esiliculosus_genome
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***ec-number
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== Genes associated with this reaction  ==
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* [[RXN-9157]]
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Genes have been associated with this reaction based on different elements listed below.
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** esiliculosus_genome
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* Gene: [[Ec-05_003640]]
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***ec-number
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** Source: [[annotation-esiliculosus_genome]]
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* [[RXN66-336]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** esiliculosus_genome
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* Gene: [[Ec-21_003470]]
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***ec-number
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** Source: [[annotation-esiliculosus_genome]]
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== Pathways associated ==
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*** Assignment: EC-NUMBER
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* [[PWY-4041]]
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* Gene: [[Ec-07_002870]]
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* [[PWY-5826]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[PWY66-375]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-11_000360]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-27_006560]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-07_007310]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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== Pathways ==
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* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
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** '''10''' reactions found over '''12''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=7084129}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain}}
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{{#set: right end position=7089373}}
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{{#set: common name=SDH1, succinate dehydrogenase subunit 1}}
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{{#set: centisome position=95.98936    }}
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{{#set: common name=SDH3, succinate dehydrogenase subunit 3}}
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{{#set: common name=Esi_0014_0172|Esi0014_0172|GGT}}
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{{#set: common name=SDH2, succinate dehydrogenase subunit 2}}
−
{{#set: reaction associated=GAMMA-GLUTAMYLTRANSFERASE-RXN|RXN-6601|RXN-9157|RXN66-336}}
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{{#set: common name=SDH4, succinate dehydrogenase subunit 4}}
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{{#set: pathway associated=PWY-4041|PWY-5826|PWY66-375}}
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{{#set: ec number=EC-1.3.5.1}}
 +
{{#set: gene associated=Ec-05_003640|Ec-21_003470|Ec-07_002870|Ec-11_000360|Ec-27_006560|Ec-07_007310}}
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{{#set: in pathway=PWY-7254|P105-PWY|PWY-6969}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:41, 21 March 2018

Reaction RXN-14971

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
    • SDH1, succinate dehydrogenase subunit 1
    • SDH3, succinate dehydrogenase subunit 3
    • SDH2, succinate dehydrogenase subunit 2
    • SDH4, succinate dehydrogenase subunit 4
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 an electron-transfer quinone[c] + 1 succinate[c] => 1 an electron-transfer quinol[c] + 1 fumarate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7254, TCA cycle VII (acetate-producers): PWY-7254
    • 7 reactions found over 9 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 10 reactions found over 12 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=DETHIOBIOTIN-SYN-RXN&oldid=20799"