Difference between revisions of "Charged-ASN-tRNAs"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TREHALOSEPHOSPHA-RXN TREHALOSEPHOSPHA-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Treha...")
(Created page with "Category:Gene == Gene Ec-10_002360 == * left end position: ** 2480564 * transcription direction: ** NEGATIVE * right end position: ** 2485885 * centisome position: ** 38.1...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TREHALOSEPHOSPHA-RXN TREHALOSEPHOSPHA-RXN] ==
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== Gene Ec-10_002360 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 2480564
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* common name:
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* transcription direction:
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** Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase
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** NEGATIVE
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** HAD-like domain
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* right end position:
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* ec number:
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** 2485885
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** [http://enzyme.expasy.org/EC/3.1.3.12 EC-3.1.3.12]
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* centisome position:
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** 38.156742   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0185_0018
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** Esi0185_0018
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[DOPAMINE-BETA-MONOOXYGENASE-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[TREHALOSE-6P]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[TREHALOSE]][c]
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* With common name(s):
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** 1 H2O[c] '''+''' 1 α,α-trehalose 6-phosphate[c] '''=>''' 1 phosphate[c] '''+''' 1 α,α-trehalose[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-24_004390]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[aragem]]
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* [[Ec-05_002680]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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* [[Ec-22_003320]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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* [[Ec-20_003980]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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* [[Ec-08_005270]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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* [[Ec-11_002540]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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* [[Ec-06_003140]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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* [[Ec-19_005250]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[TREHALOSESYN-PWY]], trehalose biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=TREHALOSESYN-PWY TREHALOSESYN-PWY]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-881]], trehalose biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-881 PWY-881]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[TRESYN-PWY]], trehalose biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=TRESYN-PWY TRESYN-PWY]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: go-term
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== Pathways associated ==
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* [[PWY66-301]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=2480564}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23420 23420]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=2485885}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02778 R02778]
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{{#set: centisome position=38.156742    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R06228 R06228]
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{{#set: common name=Esi_0185_0018|Esi0185_0018}}
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* UNIPROT:
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{{#set: reaction associated=DOPAMINE-BETA-MONOOXYGENASE-RXN}}
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** [http://www.uniprot.org/uniprot/P31678 P31678]
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{{#set: pathway associated=PWY66-301}}
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** [http://www.uniprot.org/uniprot/P31688 P31688]
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** [http://www.uniprot.org/uniprot/Q00786 Q00786]
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** [http://www.uniprot.org/uniprot/P78875 P78875]
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** [http://www.uniprot.org/uniprot/O64896 O64896]
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** [http://www.uniprot.org/uniprot/O64897 O64897]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase}}
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{{#set: common name=HAD-like domain}}
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{{#set: ec number=EC-3.1.3.12}}
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{{#set: gene associated=Ec-24_004390|Ec-05_002680|Ec-22_003320|Ec-20_003980|Ec-08_005270|Ec-11_002540|Ec-06_003140|Ec-19_005250}}
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{{#set: in pathway=TREHALOSESYN-PWY|PWY-881|TRESYN-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 13:44, 21 March 2018

Gene Ec-10_002360

  • left end position:
    • 2480564
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 2485885
  • centisome position:
    • 38.156742
  • Synonym(s):
    • Esi_0185_0018
    • Esi0185_0018

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Charged-ASN-tRNAs&oldid=21263"