Difference between revisions of "23S-rRNA-uridine955-2504-2580"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17113 RXN-17113] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-CoA oxidase, partial *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5841 RXN-5841] == * direction: ** LEFT-TO-RIGHT * common name: ** 5'-nucleotidase * ec number:...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17113 RXN-17113] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5841 RXN-5841] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** acyl-CoA oxidase, partial
+
** 5'-nucleotidase
−
** acyl-CoA oxidase
+
−
** Acyl-CoA oxidase/dehydrogenase, central domain
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.3.6 EC-1.3.3.6]
+
** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-18491]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD-18492]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
+
** 1 [[NICOTINAMIDE_NUCLEOTIDE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[NICOTINAMIDE_RIBOSE]][c] '''+''' 1 [[Pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 (6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA[c] '''+''' 1 oxygen[c] '''=>''' 1 (2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA[c] '''+''' 1 hydrogen peroxide[c]
+
** 1 β-nicotinamide D-ribonucleotide[c] '''+''' 1 H2O[c] '''=>''' 1 1-(β-D ribofuranosyl)nicotinamide[c] '''+''' 1 phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-08_006390]]
+
* Gene: [[Ec-12_005060]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: GO-TERM
−
* [[Ec-22_002920]]
+
* Gene: [[Ec-15_000820]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: GO-TERM
−
* [[Ec-26_004320]]
+
* Gene: [[Ec-05_000950]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7726]], (4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoate biosynthesis (6-desaturase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7726 PWY-7726]
+
* [[PWY-5381]], pyridine nucleotide cycling (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5381 PWY-5381]
−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
** '''5''' reactions found over '''11''' reactions in the full pathway
 +
* [[NAD-BIOSYNTHESIS-II]], NAD salvage pathway III: [http://metacyc.org/META/NEW-IMAGE?object=NAD-BIOSYNTHESIS-II NAD-BIOSYNTHESIS-II]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 36: Line 36:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30815 30815]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02323 R02323]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=acyl-CoA oxidase, partial}}
+
{{#set: common name=5'-nucleotidase}}
−
{{#set: common name=acyl-CoA oxidase}}
+
{{#set: ec number=EC-3.1.3.5}}
−
{{#set: common name=Acyl-CoA oxidase/dehydrogenase, central domain}}
+
{{#set: gene associated=Ec-12_005060|Ec-15_000820|Ec-05_000950}}
−
{{#set: ec number=EC-1.3.3.6}}
+
{{#set: in pathway=PWY-5381|NAD-BIOSYNTHESIS-II}}
−
{{#set: gene associated=Ec-08_006390|Ec-22_002920|Ec-26_004320}}
+
−
{{#set: in pathway=PWY-7726}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:47, 21 March 2018

Reaction RXN-5841

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 5'-nucleotidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=23S-rRNA-uridine955-2504-2580&oldid=21597"