Difference between revisions of "CPD-1083"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Ec-12_004890 == * left end position: ** 4510169 * transcription direction: ** POSITIVE * right end position: ** 4512566 * centisome position: ** 54.1...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN] == * direction: ** LEFT-...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Ec-12_004890 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN] ==
−
* left end position:
+
* direction:
−
** 4510169
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** POSITIVE
+
** GHMP kinase, C-terminal domain
−
* right end position:
+
* ec number:
−
** 4512566
+
** [http://enzyme.expasy.org/EC/4.1.1.33 EC-4.1.1.33]
−
* centisome position:
+
−
** 54.104378   
+
 
* Synonym(s):
 
* Synonym(s):
−
** Esi_0070_0013
 
−
** Esi0070_0013
 
−
** UROS
 
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[UROGENIIISYN-RXN]]
+
* With identifiers:
−
** esiliculosus_genome
+
** 1 [[ATP]][c] '''+''' 1 [[CPD-641]][c] '''=>''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c]
−
***ec-number
+
* With common name(s):
−
== Pathways associated ==
+
** 1 ATP[c] '''+''' 1 (R)-mevalonate diphosphate[c] '''=>''' 1 isopentenyl diphosphate[c] '''+''' 1 CO2[c] '''+''' 1 phosphate[c] '''+''' 1 ADP[c]
−
* [[PWY-5189]]
+
 
−
* [[PWY-5188]]
+
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-21_001440]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-aragem]]
 +
== Pathways ==
 +
* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
 +
** '''7''' reactions found over '''8''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=4510169}}
+
* RHEA:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23732 23732]
−
{{#set: right end position=4512566}}
+
* LIGAND-RXN:
−
{{#set: centisome position=54.104378    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01121 R01121]
−
{{#set: common name=Esi_0070_0013|Esi0070_0013|UROS}}
+
* UNIPROT:
−
{{#set: reaction associated=UROGENIIISYN-RXN}}
+
** [http://www.uniprot.org/uniprot/P32377 P32377]
−
{{#set: pathway associated=PWY-5189|PWY-5188}}
+
** [http://www.uniprot.org/uniprot/Q9U2A1 Q9U2A1]
 +
** [http://www.uniprot.org/uniprot/Q9U294 Q9U294]
 +
** [http://www.uniprot.org/uniprot/O13963 O13963]
 +
** [http://www.uniprot.org/uniprot/Q9M381 Q9M381]
 +
** [http://www.uniprot.org/uniprot/O23722 O23722]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=GHMP kinase, C-terminal domain}}
 +
{{#set: ec number=EC-4.1.1.33}}
 +
{{#set: gene associated=Ec-21_001440}}
 +
{{#set: in pathway=PWY-922|PWY-7391}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 13:48, 21 March 2018

Reaction DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • GHMP kinase, C-terminal domain
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 (R)-mevalonate diphosphate[c] => 1 isopentenyl diphosphate[c] + 1 CO2[c] + 1 phosphate[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-922, mevalonate pathway I: PWY-922
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-7391, isoprene biosynthesis II (engineered): PWY-7391
    • 7 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=CPD-1083&oldid=21831"