Difference between revisions of "Ec-03 000060"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=VALINE--TRNA-LIGASE-RXN VALINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-16475 CPD-16475] == * smiles: ** CC3(C(O)C(O)C(O)C(OC2(C(NC(C)=O)C(O)OC(CO)C(OC1(OC(CO)C(O)...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=VALINE--TRNA-LIGASE-RXN VALINE--TRNA-LIGASE-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-16475 CPD-16475] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** CC3(C(O)C(O)C(O)C(OC2(C(NC(C)=O)C(O)OC(CO)C(OC1(OC(CO)C(O)C(O)C(O)1))2))O3)
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* inchi key:
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** InChIKey=HBBOZFUQJDYASD-QGTNPELVSA-N
 
* common name:
 
* common name:
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** Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding
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** β-D-galactosyl-(1→4)-[α-L-fucosyl-(1→3)]-N-acetyl-β-D-glucosamine
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** Valine--tRNA ligase
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* molecular weight:
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* ec number:
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** 529.494   
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** [http://enzyme.expasy.org/EC/6.1.1.9 EC-6.1.1.9]
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* Synonym(s):
 
* Synonym(s):
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** β-D-galactosyl-1,4-[α-L-fucosyl-1,3]-N-acetyl-D-glucosamine
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** Lewis x epitope
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** Lex epitope
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[PROTON]][c] '''+''' 1 [[VAL-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[VAL]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Charged-VAL-tRNAs]][c] '''+''' 1 [[AMP]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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* [[RXN-15268]]
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** 1 H+[c] '''+''' 1 a tRNAval[c] '''+''' 1 ATP[c] '''+''' 1 L-valine[c] '''=>''' 1 diphosphate[c] '''+''' 1 an L-valyl-[tRNAval][c] '''+''' 1 AMP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-08_004480]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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* [[Ec-12_005070]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10704 10704]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=11813424 11813424]
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* LIGAND-RXN:
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* CHEBI:
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** [http://www.genome.jp/dbget-bin/www_bget?R03665 R03665]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=62287 62287]
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* UNIPROT:
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{{#set: smiles=CC3(C(O)C(O)C(O)C(OC2(C(NC(C)=O)C(O)OC(CO)C(OC1(OC(CO)C(O)C(O)C(O)1))2))O3)}}
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** [http://www.uniprot.org/uniprot/P28350 P28350]
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{{#set: inchi key=InChIKey=HBBOZFUQJDYASD-QGTNPELVSA-N}}
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** [http://www.uniprot.org/uniprot/P36420 P36420]
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{{#set: common name=β-D-galactosyl-(1→4)-[α-L-fucosyl-(1→3)]-N-acetyl-β-D-glucosamine}}
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** [http://www.uniprot.org/uniprot/P56000 P56000]
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{{#set: molecular weight=529.494    }}
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** [http://www.uniprot.org/uniprot/O51680 O51680]
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{{#set: common name=β-D-galactosyl-1,4-[α-L-fucosyl-1,3]-N-acetyl-D-glucosamine|Lewis x epitope|Lex epitope}}
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** [http://www.uniprot.org/uniprot/O67411 O67411]
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{{#set: reversible reaction associated=RXN-15268}}
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** [http://www.uniprot.org/uniprot/O83998 O83998]
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** [http://www.uniprot.org/uniprot/Q9ZCN6 Q9ZCN6]
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** [http://www.uniprot.org/uniprot/Q9Z987 Q9Z987]
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** [http://www.uniprot.org/uniprot/Q9X2D7 Q9X2D7]
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** [http://www.uniprot.org/uniprot/Q9ZK61 Q9ZK61]
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** [http://www.uniprot.org/uniprot/Q9CDP6 Q9CDP6]
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** [http://www.uniprot.org/uniprot/Q58413 Q58413]
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** [http://www.uniprot.org/uniprot/P43834 P43834]
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** [http://www.uniprot.org/uniprot/Q9PPE4 Q9PPE4]
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** [http://www.uniprot.org/uniprot/O84304 O84304]
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** [http://www.uniprot.org/uniprot/P47576 P47576]
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** [http://www.uniprot.org/uniprot/Q94678 Q94678]
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** [http://www.uniprot.org/uniprot/Q04462 Q04462]
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** [http://www.uniprot.org/uniprot/P26640 P26640]
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** [http://www.uniprot.org/uniprot/Q05873 Q05873]
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** [http://www.uniprot.org/uniprot/Q26177 Q26177]
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** [http://www.uniprot.org/uniprot/P75304 P75304]
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** [http://www.uniprot.org/uniprot/Q49021 Q49021]
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** [http://www.uniprot.org/uniprot/P11931 P11931]
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** [http://www.uniprot.org/uniprot/P07806 P07806]
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** [http://www.uniprot.org/uniprot/P07118 P07118]
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** [http://www.uniprot.org/uniprot/O77443 O77443]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding}}
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{{#set: common name=Valine--tRNA ligase}}
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{{#set: ec number=EC-6.1.1.9}}
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{{#set: gene associated=Ec-08_004480|Ec-12_005070}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 14:48, 21 March 2018

Metabolite CPD-16475

  • smiles:
    • CC3(C(O)C(O)C(O)C(OC2(C(NC(C)=O)C(O)OC(CO)C(OC1(OC(CO)C(O)C(O)C(O)1))2))O3)
  • inchi key:
    • InChIKey=HBBOZFUQJDYASD-QGTNPELVSA-N
  • common name:
    • β-D-galactosyl-(1→4)-[α-L-fucosyl-(1→3)]-N-acetyl-β-D-glucosamine
  • molecular weight:
    • 529.494
  • Synonym(s):
    • β-D-galactosyl-1,4-[α-L-fucosyl-1,3]-N-acetyl-D-glucosamine
    • Lewis x epitope
    • Lex epitope

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links


"β-D-galactosyl-(1→4)-[α-L-fucosyl-(1→3)]-N-acetyl-β-D-glucosamine" cannot be used as a page name in this wiki.
"β-D-galactosyl-1,4-[α-L-fucosyl-1,3]-N-acetyl-D-glucosamine" cannot be used as a page name in this wiki.
Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-03_000060&oldid=21841"