Difference between revisions of "R344-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-20 RXN1F-20] == * direction: ** LEFT-TO-RIGHT * common name: ** Magnesium chelatase subunit H...")
(Created page with "Category:Gene == Gene Ec-10_005260 == * left end position: ** 5341198 * transcription direction: ** NEGATIVE * right end position: ** 5349399 * centisome position: ** 82.1...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-20 RXN1F-20] ==
+
== Gene Ec-10_005260 ==
−
* direction:
+
* left end position:
−
** LEFT-TO-RIGHT
+
** 5341198
−
* common name:
+
* transcription direction:
−
** Magnesium chelatase subunit H, putative chloroplast precursor
+
** NEGATIVE
−
** Magnesium chelatase subunit D, putative chloroplast precursor
+
* right end position:
−
* ec number:
+
** 5349399
−
** [http://enzyme.expasy.org/EC/6.6.1.1 EC-6.6.1.1]
+
* centisome position:
 +
** 82.15983   
 
* Synonym(s):
 
* Synonym(s):
 +
** Esi_0006_0044
 +
** Esi0006_0044
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[3.2.1.96-RXN]]
−
** 1 [[MG+2]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 3 [[PROTON]][c] '''+''' 1 [[MG-PROTOPORPHYRIN]][c]
+
−
* With common name(s):
+
−
** 1 Mg2+[c] '''+''' 1 H2O[c] '''+''' 1 protoporphyrin IX[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 phosphate[c] '''+''' 3 H+[c] '''+''' 1 Mg-protoporphyrin[c]
+
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Ec-14_006490]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
* [[Ec-01_002840]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[aragem]]
+
−
* [[Ec-02_001580]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[aragem]]
+
−
== Pathways  ==
+
−
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
+
−
** '''4''' reactions found over '''9''' reactions in the full pathway
+
−
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
+
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-aragem]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[annotation]]
+
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
 +
== Pathways associated ==
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: left end position=5341198}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13961 13961]
+
{{#set: transcription direction=NEGATIVE}}
−
* LIGAND-RXN:
+
{{#set: right end position=5349399}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03877 R03877]
+
{{#set: centisome position=82.15983    }}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: common name=Esi_0006_0044|Esi0006_0044}}
−
{{#set: common name=Magnesium chelatase subunit H, putative chloroplast precursor}}
+
{{#set: reaction associated=3.2.1.96-RXN}}
−
{{#set: common name=Magnesium chelatase subunit D, putative chloroplast precursor}}
+
−
{{#set: ec number=EC-6.6.1.1}}
+
−
{{#set: gene associated=Ec-14_006490|Ec-01_002840|Ec-02_001580}}
+
−
{{#set: in pathway=PWY-5531|CHLOROPHYLL-SYN|PWY-7159}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 13:50, 21 March 2018

Gene Ec-10_005260

  • left end position:
    • 5341198
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 5349399
  • centisome position:
    • 82.15983
  • Synonym(s):
    • Esi_0006_0044
    • Esi0006_0044

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=R344-RXN&oldid=22036"