Difference between revisions of "RXN0-5359"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9633 RXN-9633] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-stearoyl-[acyl-carrier...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVT-RXN GCVT-RXN] == * direction: ** REVERSIBLE * common name: ** aminomethyltransferase ** Aminom...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9633 RXN-9633] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVT-RXN GCVT-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** 3-oxo-stearoyl-[acyl-carrier protein] reductase
+
** aminomethyltransferase
−
** NAD(P)-binding domain
+
** Aminomethyltransferase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/2.1.2.10 EC-2.1.2.10]
−
** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[3-oxo-stearoyl-ACPs]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[R-3-hydroxystearoyl-ACPs]][c] '''+''' 1 [[NADP]][c]
+
** 1 [[THF-GLU-N]][c] '''+''' 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''<=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[DIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a 3-oxo-stearoyl-[acp][c] '''+''' 1 NADPH[c] '''+''' 1 H+[c] '''=>''' 1 a (3R)-3-hydroxystearoyl-[acp][c] '''+''' 1 NADP+[c]
+
** 1 a tetrahydrofolate[c] '''+''' 1 a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine[c] '''<=>''' 1 ammonium[c] '''+''' 1 a [glycine-cleavage complex H protein] N6-dihydrolipoyl-L-lysine[c] '''+''' 1 a 5,10-methylene-tetrahydrofolate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-01_007100]]
+
* Gene: [[Ec-24_001010]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: GO-TERM
 +
* Gene: [[Ec-20_004610]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-00_002470]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-07_004110]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5989]], stearate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5989 PWY-5989]
+
* [[GLYCLEAV-PWY]], glycine cleavage: [http://metacyc.org/META/NEW-IMAGE?object=GLYCLEAV-PWY GLYCLEAV-PWY]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY3O-355]], stearate biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-355 PWY3O-355]
+
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* RHEA:
−
{{#set: common name=3-oxo-stearoyl-[acyl-carrier protein] reductase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16945 16945]
−
{{#set: common name=NAD(P)-binding domain}}
+
* LIGAND-RXN:
−
{{#set: ec number=EC-2.3.1.86}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R04125 R04125]
−
{{#set: ec number=EC-1.1.1.100}}
+
* UNIPROT:
−
{{#set: gene associated=Ec-01_007100}}
+
** [http://www.uniprot.org/uniprot/P25285 P25285]
−
{{#set: in pathway=PWY-5989|PWY3O-355}}
+
** [http://www.uniprot.org/uniprot/P28337 P28337]
 +
** [http://www.uniprot.org/uniprot/P27248 P27248]
 +
** [http://www.uniprot.org/uniprot/Q9UZP8 Q9UZP8]
 +
** [http://www.uniprot.org/uniprot/Q9JVP2 Q9JVP2]
 +
** [http://www.uniprot.org/uniprot/P48728 P48728]
 +
** [http://www.uniprot.org/uniprot/P49364 P49364]
 +
** [http://www.uniprot.org/uniprot/P49095 P49095]
 +
** [http://www.uniprot.org/uniprot/P49363 P49363]
 +
** [http://www.uniprot.org/uniprot/P54260 P54260]
 +
** [http://www.uniprot.org/uniprot/P49361 P49361]
 +
** [http://www.uniprot.org/uniprot/P49362 P49362]
 +
** [http://www.uniprot.org/uniprot/O49954 O49954]
 +
** [http://www.uniprot.org/uniprot/P93256 P93256]
 +
** [http://www.uniprot.org/uniprot/O32955 O32955]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=aminomethyltransferase}}
 +
{{#set: common name=Aminomethyltransferase}}
 +
{{#set: ec number=EC-2.1.2.10}}
 +
{{#set: gene associated=Ec-24_001010|Ec-20_004610|Ec-00_002470|Ec-07_004110}}
 +
{{#set: in pathway=GLYCLEAV-PWY}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:51, 21 March 2018

Reaction GCVT-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • aminomethyltransferase
    • Aminomethyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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