Difference between revisions of "C5"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=2-HYDROXY-2-METHYLPROPANENITRILE 2-HYDROXY-2-METHYLPROPANENITRILE] == * smiles: ** CC(O)(C)C#N...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATINE-DEIMINASE-RXN AGMATINE-DEIMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** A...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=2-HYDROXY-2-METHYLPROPANENITRILE 2-HYDROXY-2-METHYLPROPANENITRILE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATINE-DEIMINASE-RXN AGMATINE-DEIMINASE-RXN] ==
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* smiles:
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* direction:
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** CC(O)(C)C#N
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=MWFMGBPGAXYFAR-UHFFFAOYSA-N
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* common name:
 
* common name:
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** acetone cyanohydrin
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** Agmatine deiminase
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* molecular weight:
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* ec number:
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** 85.105   
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** [http://enzyme.expasy.org/EC/3.5.3.12 EC-3.5.3.12]
 
* Synonym(s):
 
* Synonym(s):
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** 2-hydroxy-2-methylpropanenitrile
 
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** 2-hydroxyisobutyronitrile
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[RXN-5341]]
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** 1 [[AGMATHINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-597]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 agmatine[c] '''+''' 1 H2O[c] '''=>''' 1 ammonium[c] '''+''' 1 N-carbamoylputrescine[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-02_001540]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY-43]], putrescine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-43 PWY-43]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[ARGDEG-III-PWY]], L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGDEG-III-PWY ARGDEG-III-PWY]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* NCI:
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* RHEA:
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** [http://cactus.nci.nih.gov/ncidb2.2/?nsc=131093 131093]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18038 18038]
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* CAS : 75-86-5
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* LIGAND-RXN:
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* DRUGBANK : DB02203
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** [http://www.genome.jp/dbget-bin/www_bget?R01416 R01416]
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* PUBCHEM:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=6406 6406]
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{{#set: common name=Agmatine deiminase}}
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* HMDB : HMDB60427
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{{#set: ec number=EC-3.5.3.12}}
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* LIGAND-CPD:
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{{#set: gene associated=Ec-02_001540}}
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** [http://www.genome.jp/dbget-bin/www_bget?C02659 C02659]
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{{#set: in pathway=PWY-43|ARGDEG-III-PWY}}
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* CHEMSPIDER:
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{{#set: reconstruction category=annotation}}
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** [http://www.chemspider.com/Chemical-Structure.6166.html 6166]
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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* CHEBI:
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{{#set: reconstruction tool=pathwaytools}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=15348 15348]
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{{#set: smiles=CC(O)(C)C#N}}
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{{#set: inchi key=InChIKey=MWFMGBPGAXYFAR-UHFFFAOYSA-N}}
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{{#set: common name=acetone cyanohydrin}}
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{{#set: molecular weight=85.105    }}
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{{#set: common name=2-hydroxy-2-methylpropanenitrile|2-hydroxyisobutyronitrile}}
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{{#set: produced by=RXN-5341}}
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Revision as of 13:53, 21 March 2018

Reaction AGMATINE-DEIMINASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Agmatine deiminase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 agmatine[c] + 1 H2O[c] => 1 ammonium[c] + 1 N-carbamoylputrescine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-43, putrescine biosynthesis II: PWY-43
    • 2 reactions found over 3 reactions in the full pathway
  • ARGDEG-III-PWY, L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway): ARGDEG-III-PWY
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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