Difference between revisions of "PWY-241"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-OXOACYL-ACP-SYNTH-BASE-RXN 3-OXOACYL-ACP-SYNTH-BASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-47...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-OXOACYL-ACP-SYNTH-BASE-RXN 3-OXOACYL-ACP-SYNTH-BASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
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** Beta-ketoacyl synthase, N-terminal
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** TCA cycle II (plants and fungi)
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** Thiolase-like, subgroup
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** beta-ketoacyl synthase, partial
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** 3-oxoacyl-[acyl-carrier-protein] synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
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* Synonym(s):
 
* Synonym(s):
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** TCA cycle -- aerobic respiration
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** tricarboxylic acid cycle
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** citric acid cycle
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** Szent-Gyorgyi-Krebs cycle
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** Krebs cycle
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''8''' reactions found over '''9''' reactions in the full pathway
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** 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ACETYL-ACP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[Acetoacetyl-ACPs]][c] '''+''' 1 [[ACP]][c]
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* [[2OXOGLUTARATEDEH-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 a malonyl-[acp][c] '''+''' 1 H+[c] '''+''' 1 an acetyl-[acp][c] '''=>''' 1 CO2[c] '''+''' 1 an acetoacetyl-[acp][c] '''+''' 1 a holo-[acyl-carrier protein][c]
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*** [[Ec-21_002300]]
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*** [[Ec-27_004160]]
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== Genes associated with this reaction  ==
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*** [[Ec-25_000020]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 reconstruction source(s) associated:
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* [[Ec-12_000650]]
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*** [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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* [[ACONITATEDEHYDR-RXN]]
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***GO-TERM
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** 2 associated gene(s):
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** [[pantograph]]-[[aragem]]
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*** [[Ec-16_001000]]
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** [[pantograph]]-[[aragem]]
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*** [[Ec-12_000170]]
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* [[Ec-27_003480]]
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** 1 reconstruction source(s) associated:
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** ESILICULOSUS_GENOME
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*** [[annotation-esiliculosus_genome]]
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***EC-NUMBER
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* [[ACONITATEHYDR-RXN]]
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* [[Ec-27_002090]]
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** 2 associated gene(s):
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** ESILICULOSUS_GENOME
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*** [[Ec-12_000170]]
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***EC-NUMBER
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*** [[Ec-16_001000]]
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** [[pantograph]]-[[aragem]]
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** 1 reconstruction source(s) associated:
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** [[pantograph]]-[[aragem]]
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*** [[annotation-esiliculosus_genome]]
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* [[Ec-12_000640]]
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* [[CITSYN-RXN]]
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** ESILICULOSUS_GENOME
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** 0 associated gene:
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***EC-NUMBER
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** 1 reconstruction source(s) associated:
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== Pathways  ==
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*** [[annotation-esiliculosus_genome]]
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* [[PWY-5965]], fatty acid biosynthesis initiation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5965 PWY-5965]
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* [[FUMHYDR-RXN]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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** 2 associated gene(s):
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* [[PWY-5966]], fatty acid biosynthesis initiation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5966 PWY-5966]
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*** [[Ec-23_003460]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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*** [[Ec-25_001360]]
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* [[FASYN-INITIAL-PWY]], superpathway of fatty acid biosynthesis initiation (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=FASYN-INITIAL-PWY FASYN-INITIAL-PWY]
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** 2 reconstruction source(s) associated:
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** '''5''' reactions found over '''8''' reactions in the full pathway
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*** [[annotation-esiliculosus_genome]]
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* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
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*** [[orthology-aragem]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[MALATE-DEH-RXN]]
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== Reconstruction information  ==
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** 2 associated gene(s):
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* [[orthology]]:
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*** [[Ec-10_006200]]
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** [[pantograph]]:
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*** [[Ec-02_003100]]
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*** [[aragem]]
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** 2 reconstruction source(s) associated:
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* [[annotation]]:
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*** [[annotation-esiliculosus_genome]]
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** [[pathwaytools]]:
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*** [[orthology-aragem]]
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*** [[esiliculosus_genome]]
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* [[SUCCCOASYN-RXN]]
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** 2 associated gene(s):
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*** [[Ec-10_000030]]
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*** [[Ec-02_001020]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN]]
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** 6 associated gene(s):
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*** [[Ec-07_002870]]
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*** [[Ec-07_007310]]
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*** [[Ec-11_000360]]
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*** [[Ec-21_003470]]
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*** [[Ec-05_003640]]
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*** [[Ec-27_006560]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=ISOCITRATE-DEHYDROGENASE-NAD+-RXN ISOCITRATE-DEHYDROGENASE-NAD+-RXN]
 
== External links  ==
 
== External links  ==
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* UNIPROT:
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{{#set: taxonomic range=TAX-4751}}
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** [http://www.uniprot.org/uniprot/P23902 P23902]
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.uniprot.org/uniprot/P0A6R0 P0A6R0]
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{{#set: common name=TCA cycle II (plants and fungi)}}
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** [http://www.uniprot.org/uniprot/P49327 P49327]
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{{#set: common name=TCA cycle -- aerobic respiration|tricarboxylic acid cycle|citric acid cycle|Szent-Gyorgyi-Krebs cycle|Krebs cycle}}
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** [http://www.uniprot.org/uniprot/P43710 P43710]
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{{#set: reaction found=8}}
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** [http://www.uniprot.org/uniprot/Q9HYR2 Q9HYR2]
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{{#set: total reaction=9}}
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** [http://www.uniprot.org/uniprot/O67612 O67612]
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{{#set: completion rate=89.0}}
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** [http://www.uniprot.org/uniprot/P20582 P20582]
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** [http://www.uniprot.org/uniprot/Q9JT63 Q9JT63]
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** [http://www.uniprot.org/uniprot/Q9JW56 Q9JW56]
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** [http://www.uniprot.org/uniprot/Q9PMZ6 Q9PMZ6]
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** [http://www.uniprot.org/uniprot/P43711 P43711]
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** [http://www.uniprot.org/uniprot/O25284 O25284]
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** [http://www.uniprot.org/uniprot/Q9JX65 Q9JX65]
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** [http://www.uniprot.org/uniprot/O34340 O34340]
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** [http://www.uniprot.org/uniprot/Q9PI63 Q9PI63]
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** [http://www.uniprot.org/uniprot/P0AAI5 P0AAI5]
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** [http://www.uniprot.org/uniprot/Q07510 Q07510]
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** [http://www.uniprot.org/uniprot/Q06097 Q06097]
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** [http://www.uniprot.org/uniprot/P41175 P41175]
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** [http://www.uniprot.org/uniprot/P31176 P31176]
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** [http://www.uniprot.org/uniprot/Q40027 Q40027]
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** [http://www.uniprot.org/uniprot/Q40028 Q40028]
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** [http://www.uniprot.org/uniprot/P73283 P73283]
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** [http://www.uniprot.org/uniprot/P0A953 P0A953]
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** [http://www.uniprot.org/uniprot/O64485 O64485]
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** [http://www.uniprot.org/uniprot/O65677 O65677]
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** [http://www.uniprot.org/uniprot/Q39310 Q39310]
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** [http://www.uniprot.org/uniprot/O23738 O23738]
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** [http://www.uniprot.org/uniprot/Q41134 Q41134]
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** [http://www.uniprot.org/uniprot/Q41135 Q41135]
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** [http://www.uniprot.org/uniprot/Q54208 Q54208]
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** [http://www.uniprot.org/uniprot/O54440 O54440]
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** [http://www.uniprot.org/uniprot/P55338 P55338]
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** [http://www.uniprot.org/uniprot/Q9RA31 Q9RA31]
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** [http://www.uniprot.org/uniprot/P12276 P12276]
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** [http://www.uniprot.org/uniprot/P12785 P12785]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Beta-ketoacyl synthase, N-terminal}}
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{{#set: common name=Thiolase-like, subgroup}}
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{{#set: common name=beta-ketoacyl synthase, partial}}
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{{#set: common name=3-oxoacyl-[acyl-carrier-protein] synthase}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: ec number=EC-2.3.1.41}}
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{{#set: gene associated=Ec-12_000650|Ec-27_003480|Ec-27_002090|Ec-12_000640}}
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{{#set: in pathway=PWY-5965|PWY-5966|FASYN-INITIAL-PWY|PWY-7388}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=aragem}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=esiliculosus_genome}}
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Revision as of 20:43, 17 March 2018

Pathway PWY-5690

  • taxonomic range:
  • common name:
    • TCA cycle II (plants and fungi)
  • Synonym(s):
    • TCA cycle -- aerobic respiration
    • tricarboxylic acid cycle
    • citric acid cycle
    • Szent-Gyorgyi-Krebs cycle
    • Krebs cycle

Reaction(s) found

8 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-241&oldid=10106"