Difference between revisions of "TRANS-3-METHYL-GLUTACONYL-COA"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNITHINE-GLU-AMINOTRANSFERASE-RXN ORNITHINE-GLU-AMINOTRANSFERASE-RXN] == * direction: ** REVERSIBL...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11357 RXN-11357] == * direction: ** LEFT-TO-RIGHT * common name: ** 9,9′-dicis-ζ-car...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNITHINE-GLU-AMINOTRANSFERASE-RXN ORNITHINE-GLU-AMINOTRANSFERASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11357 RXN-11357] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Ornithine--oxo-glutarate aminotransferase
+
** 9,9′-dicis-ζ-carotene desaturase
−
** Ornithine aminotransferase
+
** zeta-carotene desaturase, chloroplast precursor
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.6.1.13 EC-2.6.1.13]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** ζ-carotene desaturase
 +
** ZDS
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[L-ORNITHINE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c] '''+''' 1 [[GLT]][c]
+
** 1 [[ETR-Quinones]][c] '''+''' 1 [[CPD-7524]][c] '''=>''' 1 [[ETR-Quinols]][c] '''+''' 1 [[CPD-7496]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-ornithine[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate-5-semialdehyde[c] '''+''' 1 L-glutamate[c]
+
** 1 an electron-transfer quinone[c] '''+''' 1 7,9,9'-cis-neurosporene[c] '''=>''' 1 an electron-transfer quinol[c] '''+''' 1 prolycopene[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-21_003730]]
+
* Gene: [[Ec-02_004660]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[ARGASEDEG-PWY]], L-arginine degradation I (arginase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGASEDEG-PWY ARGASEDEG-PWY]
+
* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''4''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-6922]], L-N&delta;-acetylornithine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6922 PWY-6922]
+
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY-6344]], L-ornithine degradation II (Stickland reaction): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6344 PWY-6344]
+
−
** '''3''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-3341]], L-proline biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3341 PWY-3341]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
−
* [[ARG-PRO-PWY]], L-arginine degradation VI (arginase 2 pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARG-PRO-PWY ARG-PRO-PWY]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-4981]], L-proline biosynthesis II (from arginine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4981 PWY-4981]
+
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
−
* [[ARGININE-SYN4-PWY]], L-ornithine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=ARGININE-SYN4-PWY ARGININE-SYN4-PWY]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
−
* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
+
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 43: Line 29:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25160 25160]
+
{{#set: common name=9,9&prime;-dicis-&zeta;-carotene desaturase}}
−
* LIGAND-RXN:
+
{{#set: common name=zeta-carotene desaturase, chloroplast precursor}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00667 R00667]
+
{{#set: common name=&zeta;-carotene desaturase|ZDS}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: gene associated=Ec-02_004660}}
−
{{#set: common name=Ornithine--oxo-glutarate aminotransferase}}
+
{{#set: in pathway=PWY-6475}}
−
{{#set: common name=Ornithine aminotransferase}}
+
−
{{#set: ec number=EC-2.6.1.13}}
+
−
{{#set: gene associated=Ec-21_003730}}
+
−
{{#set: in pathway=ARGASEDEG-PWY|PWY-6922|PWY-6344|PWY-3341|ARG-PRO-PWY|PWY-4981|ARGININE-SYN4-PWY|CITRULBIO-PWY}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:53, 21 March 2018

Reaction RXN-11357

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 9,9′-dicis-ζ-carotene desaturase
    • zeta-carotene desaturase, chloroplast precursor
  • Synonym(s):
    • ζ-carotene desaturase
    • ZDS

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 an electron-transfer quinone[c] + 1 7,9,9'-cis-neurosporene[c] => 1 an electron-transfer quinol[c] + 1 prolycopene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6475, trans-lycopene biosynthesis II (plants): PWY-6475
    • 4 reactions found over 8 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=TRANS-3-METHYL-GLUTACONYL-COA&oldid=22584"