Difference between revisions of "Ec-03 005320"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=COPROPORPHYRINOGEN_III COPROPORPHYRINOGEN_III] == * smiles: ** CC1(=C2(CC5(=C(C)C(CCC([O-])=O)=...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNDECARBOX-RXN ORNDECARBOX-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Ornithine decar...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=COPROPORPHYRINOGEN_III COPROPORPHYRINOGEN_III] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNDECARBOX-RXN ORNDECARBOX-RXN] ==
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* smiles:
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* direction:
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** CC1(=C2(CC5(=C(C)C(CCC([O-])=O)=C(CC4(=C(CCC([O-])=O)C(C)=C(CC3(=C(CCC(=O)[O-])C(C)=C(CC(=C(CCC([O-])=O)1)N2)N3))N4))N5)))
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=NIUVHXTXUXOFEB-UHFFFAOYSA-J
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* common name:
 
* common name:
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** coproporphyrinogen III
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** Ornithine decarboxylase
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* molecular weight:
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* ec number:
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** 656.734   
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** [http://enzyme.expasy.org/EC/4.1.1.17 EC-4.1.1.17]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN0-1461]]
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* With identifiers:
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* [[HEMN-RXN]]
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** 1 [[L-ORNITHINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[PUTRESCINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[UROGENDECARBOX-RXN]]
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** 1 L-ornithine[c] '''+''' 1 H+[c] '''=>''' 1 putrescine[c] '''+''' 1 CO2[c]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-11_003270]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[ORNDEG-PWY]], superpathway of ornithine degradation: [http://metacyc.org/META/NEW-IMAGE?object=ORNDEG-PWY ORNDEG-PWY]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6305]], putrescine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6305 PWY-6305]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-46]], putrescine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-46 PWY-46]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 2624-63-7
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* RHEA:
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* BIGG : 41515
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22964 22964]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=20849114 20849114]
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** [http://www.genome.jp/dbget-bin/www_bget?R00670 R00670]
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* HMDB : HMDB01261
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* UNIPROT:
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P24169 P24169]
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** [http://www.genome.jp/dbget-bin/www_bget?C03263 C03263]
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** [http://www.uniprot.org/uniprot/P27121 P27121]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/P27116 P27116]
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** [http://www.chemspider.com/Chemical-Structure.20171552.html 20171552]
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** [http://www.uniprot.org/uniprot/P27120 P27120]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P43099 P43099]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57309 57309]
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** [http://www.uniprot.org/uniprot/Q9X2I6 Q9X2I6]
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* METABOLIGHTS : MTBLC57309
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** [http://www.uniprot.org/uniprot/P08432 P08432]
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{{#set: smiles=CC1(=C2(CC5(=C(C)C(CCC([O-])=O)=C(CC4(=C(CCC([O-])=O)C(C)=C(CC3(=C(CCC(=O)[O-])C(C)=C(CC(=C(CCC([O-])=O)1)N2)N3))N4))N5)))}}
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** [http://www.uniprot.org/uniprot/P27118 P27118]
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{{#set: inchi key=InChIKey=NIUVHXTXUXOFEB-UHFFFAOYSA-J}}
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** [http://www.uniprot.org/uniprot/P11926 P11926]
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{{#set: common name=coproporphyrinogen III}}
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** [http://www.uniprot.org/uniprot/P14019 P14019]
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{{#set: molecular weight=656.734    }}
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** [http://www.uniprot.org/uniprot/P00860 P00860]
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{{#set: consumed by=RXN0-1461|HEMN-RXN}}
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** [http://www.uniprot.org/uniprot/P09057 P09057]
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{{#set: produced by=UROGENDECARBOX-RXN}}
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** [http://www.uniprot.org/uniprot/Q9TZZ6 Q9TZZ6]
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** [http://www.uniprot.org/uniprot/P44317 P44317]
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** [http://www.uniprot.org/uniprot/O66940 O66940]
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** [http://www.uniprot.org/uniprot/P27119 P27119]
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** [http://www.uniprot.org/uniprot/P49725 P49725]
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** [http://www.uniprot.org/uniprot/P50134 P50134]
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** [http://www.uniprot.org/uniprot/P93351 P93351]
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** [http://www.uniprot.org/uniprot/P93357 P93357]
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** [http://www.uniprot.org/uniprot/O15696 O15696]
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** [http://www.uniprot.org/uniprot/Q84527 Q84527]
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** [http://www.uniprot.org/uniprot/P41931 P41931]
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** [http://www.uniprot.org/uniprot/O69865 O69865]
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** [http://www.uniprot.org/uniprot/Q9UQW9 Q9UQW9]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Ornithine decarboxylase}}
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{{#set: ec number=EC-4.1.1.17}}
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{{#set: gene associated=Ec-11_003270}}
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{{#set: in pathway=ORNDEG-PWY|PWY-6305|PWY-46}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:54, 21 March 2018

Reaction ORNDECARBOX-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Ornithine decarboxylase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • ORNDEG-PWY, superpathway of ornithine degradation: ORNDEG-PWY
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-6305, putrescine biosynthesis IV: PWY-6305
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-46, putrescine biosynthesis III: PWY-46
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links





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