Difference between revisions of "CPD-11520"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMINE-SYNTHASE-RXN SPERMINE-SYNTHASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** spe...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GDP GDP] == * smiles: ** C(OP(=O)([O-])OP(=O)([O-])[O-])C1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC(N)=NC=...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMINE-SYNTHASE-RXN SPERMINE-SYNTHASE-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GDP GDP] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C(OP(=O)([O-])OP(=O)([O-])[O-])C1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC(N)=NC=23)))
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* inchi key:
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** InChIKey=QGWNDRXFNXRZMB-UUOKFMHZSA-K
 
* common name:
 
* common name:
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** spermine synthase
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** GDP
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* ec number:
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* molecular weight:
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** [http://enzyme.expasy.org/EC/2.5.1.22 EC-2.5.1.22]
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** 440.179   
 
* Synonym(s):
 
* Synonym(s):
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** ppG
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** guanosine-5'-diphosphate
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** guanosine-diphosphate
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN0-748]]
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** 1 [[S-ADENOSYLMETHIONINAMINE]][c] '''+''' 1 [[SPERMIDINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[5-METHYLTHIOADENOSINE]][c] '''+''' 1 [[SPERMINE]][c]
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* [[GDPPYPHOSKIN-RXN]]
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* With common name(s):
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* [[GDPKIN-RXN]]
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** 1 S-adenosyl 3-(methylthio)propylamine[c] '''+''' 1 spermidine[c] '''=>''' 1 H+[c] '''+''' 1 S-methyl-5'-thioadenosine[c] '''+''' 1 spermine[c]
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* [[GUANOSINE-DIPHOSPHATASE-RXN]]
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* [[GDPREDUCT-RXN]]
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== Genes associated with this reaction  ==
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== Reaction(s) known to produce the compound ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-5464]]
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* [[Ec-04_002790]]
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* [[RXNQT-4141]]
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** ESILICULOSUS_GENOME
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* [[RXN-5462]]
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***GO-TERM
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* [[2.4.1.83-RXN]]
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* [[Ec-17_001590]]
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* [[RXN-5463]]
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** ESILICULOSUS_GENOME
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* [[GALACTOSIDE-3-FUCOSYLTRANSFERASE-RXN]]
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***GO-TERM
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* [[2.4.1.142-RXN]]
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== Pathways  ==
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* [[RXN-16602]]
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* [[ARGSPECAT-PWY]], spermine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ARGSPECAT-PWY ARGSPECAT-PWY]
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* [[RXN0-5462]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[RXN-8988]]
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* [[POLYAMINSYN3-PWY]], superpathway of polyamine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=POLYAMINSYN3-PWY POLYAMINSYN3-PWY]
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* [[RXN-9463]]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* [[ADENYLOSUCCINATE-SYNTHASE-RXN]]
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== Reconstruction information  ==
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* [[GUANYL-KIN-RXN]]
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* Category: [[annotation]]
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* [[2.4.1.36-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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== Reaction(s) of unknown directionality ==
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*** Tool: [[pathwaytools]]
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* [[RXN-14117]]
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* [[RXN-15268]]
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* [[SUCCINATE--COA-LIGASE-GDP-FORMING-RXN]]
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* [[RXN-12486]]
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* [[URKI-RXN]]
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* [[GALACTOSIDE-2-L-FUCOSYLTRANSFERASE-RXN]]
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* [[2.4.1.221-RXN]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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* CAS : 146-91-8
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19973 19973]
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* BIGG : 33599
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* LIGAND-RXN:
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* PUBCHEM:
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** [http://www.genome.jp/dbget-bin/www_bget?R02869 R02869]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=21604868 21604868]
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* UNIPROT:
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* HMDB : HMDB01201
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** [http://www.uniprot.org/uniprot/P52788 P52788]
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* LIGAND-CPD:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00035 C00035]
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{{#set: common name=spermine synthase}}
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* CHEMSPIDER:
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{{#set: ec number=EC-2.5.1.22}}
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** [http://www.chemspider.com/Chemical-Structure.10239187.html 10239187]
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{{#set: gene associated=Ec-04_002790|Ec-17_001590}}
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* CHEBI:
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{{#set: in pathway=ARGSPECAT-PWY|POLYAMINSYN3-PWY}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58189 58189]
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{{#set: reconstruction category=annotation}}
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* METABOLIGHTS : MTBLC58189
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: smiles=C(OP(=O)([O-])OP(=O)([O-])[O-])C1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC(N)=NC=23)))}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: inchi key=InChIKey=QGWNDRXFNXRZMB-UUOKFMHZSA-K}}
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{{#set: common name=GDP}}
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{{#set: molecular weight=440.179    }}
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{{#set: common name=ppG|guanosine-5'-diphosphate|guanosine-diphosphate}}
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{{#set: consumed by=RXN0-748|GDPPYPHOSKIN-RXN|GDPKIN-RXN|GUANOSINE-DIPHOSPHATASE-RXN|GDPREDUCT-RXN}}
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{{#set: produced by=RXN-5464|RXNQT-4141|RXN-5462|2.4.1.83-RXN|RXN-5463|GALACTOSIDE-3-FUCOSYLTRANSFERASE-RXN|2.4.1.142-RXN|RXN-16602|RXN0-5462|RXN-8988|RXN-9463|ADENYLOSUCCINATE-SYNTHASE-RXN|GUANYL-KIN-RXN|2.4.1.36-RXN}}
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{{#set: reversible reaction associated=RXN-14117|RXN-15268|SUCCINATE--COA-LIGASE-GDP-FORMING-RXN|RXN-12486|URKI-RXN|GALACTOSIDE-2-L-FUCOSYLTRANSFERASE-RXN|2.4.1.221-RXN}}

Revision as of 13:55, 21 March 2018

Metabolite GDP

  • smiles:
    • C(OP(=O)([O-])OP(=O)([O-])[O-])C1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC(N)=NC=23)))
  • inchi key:
    • InChIKey=QGWNDRXFNXRZMB-UUOKFMHZSA-K
  • common name:
    • GDP
  • molecular weight:
    • 440.179
  • Synonym(s):
    • ppG
    • guanosine-5'-diphosphate
    • guanosine-diphosphate

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 146-91-8
  • BIGG : 33599
  • PUBCHEM:
  • HMDB : HMDB01201
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC58189
"C(OP(=O)([O-])OP(=O)([O-])[O-])C1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC(N)=NC=23)))" cannot be used as a page name in this wiki.




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