Difference between revisions of "1.5.5.1-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOLEUCINE--TRNA-LIGASE-RXN ISOLEUCINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2OXOGLUTARATEDEH-RXN 2OXOGLUTARATEDEH-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-oxo...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOLEUCINE--TRNA-LIGASE-RXN ISOLEUCINE--TRNA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2OXOGLUTARATEDEH-RXN 2OXOGLUTARATEDEH-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Isoleucyl-tRNA Synthetase
+
** 2-oxoglutarate dehydrogenase complex
−
* ec number:
+
** dihydrolipoamide dehydrogenase
−
** [http://enzyme.expasy.org/EC/6.1.1.5 EC-6.1.1.5]
+
** 2-oxoglutarate dehydrogenase E1 component
 
* Synonym(s):
 
* Synonym(s):
 +
** 2-oxoglutarate dehydrogenation
 +
** α-ketoglutarate oxidative decarboxylation
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[ILE-tRNAs]][c] '''+''' 1 [[ILE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Charged-ILE-tRNAs]][c]
+
** 1 [[NAD]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[SUC-COA]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 a tRNAile[c] '''+''' 1 L-isoleucine[c] '''+''' 1 H+[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 an L-isoleucyl-[tRNAile][c]
+
** 1 NAD+[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 coenzyme A[c] '''=>''' 1 CO2[c] '''+''' 1 NADH[c] '''+''' 1 succinyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-06_008740]]
+
* Gene: [[Ec-21_002300]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-12_001710]]
+
* Gene: [[Ec-25_000020]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-27_004160]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11060 11060]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27786 27786]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03656 R03656]
+
** [http://www.genome.jp/dbget-bin/www_bget?R08549 R08549]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P18330 P18330]
+
−
** [http://www.uniprot.org/uniprot/P36422 P36422]
+
−
** [http://www.uniprot.org/uniprot/O29622 O29622]
+
−
** [http://www.uniprot.org/uniprot/P47587 P47587]
+
−
** [http://www.uniprot.org/uniprot/Q9ZCU4 Q9ZCU4]
+
−
** [http://www.uniprot.org/uniprot/P46213 P46213]
+
−
** [http://www.uniprot.org/uniprot/P41257 P41257]
+
−
** [http://www.uniprot.org/uniprot/Q9JVY4 Q9JVY4]
+
−
** [http://www.uniprot.org/uniprot/Q58357 Q58357]
+
−
** [http://www.uniprot.org/uniprot/O83466 O83466]
+
−
** [http://www.uniprot.org/uniprot/Q9Z972 Q9Z972]
+
−
** [http://www.uniprot.org/uniprot/P56456 P56456]
+
−
** [http://www.uniprot.org/uniprot/O58792 O58792]
+
−
** [http://www.uniprot.org/uniprot/O84022 O84022]
+
−
** [http://www.uniprot.org/uniprot/Q9ZJJ1 Q9ZJJ1]
+
−
** [http://www.uniprot.org/uniprot/O66651 O66651]
+
−
** [http://www.uniprot.org/uniprot/Q9CEH8 Q9CEH8]
+
−
** [http://www.uniprot.org/uniprot/O27428 O27428]
+
−
** [http://www.uniprot.org/uniprot/Q45477 Q45477]
+
−
** [http://www.uniprot.org/uniprot/O51773 O51773]
+
−
** [http://www.uniprot.org/uniprot/P46207 P46207]
+
−
** [http://www.uniprot.org/uniprot/P41252 P41252]
+
−
** [http://www.uniprot.org/uniprot/P41972 P41972]
+
−
** [http://www.uniprot.org/uniprot/P48526 P48526]
+
−
** [http://www.uniprot.org/uniprot/P75258 P75258]
+
−
** [http://www.uniprot.org/uniprot/P73505 P73505]
+
−
** [http://www.uniprot.org/uniprot/Q49024 Q49024]
+
−
** [http://www.uniprot.org/uniprot/Q49074 Q49074]
+
−
** [http://www.uniprot.org/uniprot/P43824 P43824]
+
−
** [http://www.uniprot.org/uniprot/P09436 P09436]
+
−
** [http://www.uniprot.org/uniprot/P00956 P00956]
+
−
** [http://www.uniprot.org/uniprot/Q94425 Q94425]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Isoleucyl-tRNA Synthetase}}
+
{{#set: common name=2-oxoglutarate dehydrogenase complex}}
−
{{#set: ec number=EC-6.1.1.5}}
+
{{#set: common name=dihydrolipoamide dehydrogenase}}
−
{{#set: gene associated=Ec-06_008740|Ec-12_001710}}
+
{{#set: common name=2-oxoglutarate dehydrogenase E1 component}}
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
{{#set: common name=2-oxoglutarate dehydrogenation|α-ketoglutarate oxidative decarboxylation}}
 +
{{#set: gene associated=Ec-21_002300|Ec-25_000020|Ec-27_004160}}
 +
{{#set: in pathway=PWY-7254|TCA|PWY-5690}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:56, 21 March 2018

Reaction 2OXOGLUTARATEDEH-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 2-oxoglutarate dehydrogenase complex
    • dihydrolipoamide dehydrogenase
    • 2-oxoglutarate dehydrogenase E1 component
  • Synonym(s):
    • 2-oxoglutarate dehydrogenation
    • α-ketoglutarate oxidative decarboxylation

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7254, TCA cycle VII (acetate-producers): PWY-7254
    • 7 reactions found over 9 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic): TCA
    • 9 reactions found over 10 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi): PWY-5690
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






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