Difference between revisions of "RXN-17783"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HEMN-RXN HEMN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Radical SAM * ec number: ** [...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=HOMOGENTISATE HOMOGENTISATE] == * smiles: ** C1(C(=CC(=C(C=1)O)CC([O-])=O)O) * inchi key: ** In...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Metabolite]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HEMN-RXN HEMN-RXN] ==
+
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=HOMOGENTISATE HOMOGENTISATE] ==
−
* direction:
+
* smiles:
−
** LEFT-TO-RIGHT
+
** C1(C(=CC(=C(C=1)O)CC([O-])=O)O)
 +
* inchi key:
 +
** InChIKey=IGMNYECMUMZDDF-UHFFFAOYSA-M
 
* common name:
 
* common name:
−
** Radical SAM
+
** homogentisate
−
* ec number:
+
* molecular weight:
−
** [http://enzyme.expasy.org/EC/1.3.98.c EC-1.3.98.c]
+
** 167.141   
 
* Synonym(s):
 
* Synonym(s):
 +
** 2,5-dihydroxyphenylacetate
  
−
== Reaction Formula ==
+
== Reaction(s) known to consume the compound ==
−
* With identifiers:
+
* [[HOMOGENTISATE-12-DIOXYGENASE-RXN]]
−
** 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c] '''=>''' 2 [[MET]][c] '''+''' 2 [[CARBON-DIOXIDE]][c] '''+''' 2 [[CH33ADO]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c]
+
* [[RXN-2541]]
−
* With common name(s):
+
== Reaction(s) known to produce the compound ==
−
** 2 S-adenosyl-L-methionine[c] '''+''' 1 coproporphyrinogen III[c] '''=>''' 2 L-methionine[c] '''+''' 2 CO2[c] '''+''' 2 5'-deoxyadenosine[c] '''+''' 1 protoporphyrinogen IX[c]
+
* [[4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN]]
−
 
+
== Reaction(s) of unknown directionality ==
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Ec-20_000950]]
+
−
** ESILICULOSUS_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Ec-26_002590]]
+
−
** ESILICULOSUS_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[aragem]]
+
−
* [[Ec-14_004300]]
+
−
** ESILICULOSUS_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Ec-19_002210]]
+
−
** ESILICULOSUS_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Ec-26_001240]]
+
−
** ESILICULOSUS_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
== Pathways  ==
+
−
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
+
−
** '''4''' reactions found over '''9''' reactions in the full pathway
+
−
* [[HEMESYN2-PWY]], heme biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-aragem]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* PUBCHEM:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15425 15425]
+
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5460389 5460389]
−
* LIGAND-RXN:
+
* HMDB : HMDB00130
−
** [http://www.genome.jp/dbget-bin/www_bget?R06895 R06895]
+
* LIGAND-CPD:
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://www.genome.jp/dbget-bin/www_bget?C00544 C00544]
−
{{#set: common name=Radical SAM}}
+
* CHEMSPIDER:
−
{{#set: ec number=EC-1.3.98.c}}
+
** [http://www.chemspider.com/Chemical-Structure.4573931.html 4573931]
−
{{#set: gene associated=Ec-20_000950|Ec-26_002590|Ec-14_004300|Ec-19_002210|Ec-26_001240}}
+
* CHEBI:
−
{{#set: in pathway=PWY-5531|HEMESYN2-PWY}}
+
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=16169 16169]
−
{{#set: reconstruction category=orthology|annotation}}
+
* METABOLIGHTS : MTBLC16169
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
{{#set: smiles=C1(C(=CC(=C(C=1)O)CC([O-])=O)O)}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: inchi key=InChIKey=IGMNYECMUMZDDF-UHFFFAOYSA-M}}
 +
{{#set: common name=homogentisate}}
 +
{{#set: molecular weight=167.141    }}
 +
{{#set: common name=2,5-dihydroxyphenylacetate}}
 +
{{#set: consumed by=HOMOGENTISATE-12-DIOXYGENASE-RXN|RXN-2541}}
 +
{{#set: produced by=4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN}}

Revision as of 13:56, 21 March 2018

Metabolite HOMOGENTISATE

  • smiles:
    • C1(C(=CC(=C(C=1)O)CC([O-])=O)O)
  • inchi key:
    • InChIKey=IGMNYECMUMZDDF-UHFFFAOYSA-M
  • common name:
    • homogentisate
  • molecular weight:
    • 167.141
  • Synonym(s):
    • 2,5-dihydroxyphenylacetate

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"C1(C(=CC(=C(C=1)O)CC([O-])=O)O)" cannot be used as a page name in this wiki.




Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-17783&oldid=23002"