Difference between revisions of "2.4.1.83-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** protoporp...")
(Created page with "Category:Gene == Gene Ec-18_000620 == * left end position: ** 604771 * transcription direction: ** POSITIVE * right end position: ** 610605 * centisome position: ** 12.275...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] ==
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== Gene Ec-18_000620 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 604771
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* common name:
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* transcription direction:
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** protoporphyrinogen oxidase, putative chloroplast precursor
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/1.3.3.4 EC-1.3.3.4]
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** 610605
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* centisome position:
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** 12.275733   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0020_0075
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** Esi0020_0075
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-7163]]
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** 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 3 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[PROTOPORPHYRIN_IX]][c] '''+''' 3 [[HYDROGEN-PEROXIDE]][c]
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* With common name(s):
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** 1 protoporphyrinogen IX[c] '''+''' 3 oxygen[c] '''=>''' 1 protoporphyrin IX[c] '''+''' 3 hydrogen peroxide[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-25_003100]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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** [[pantograph]]-[[aragem]]
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== Pathways  ==
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* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: go-term
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== Pathways associated ==
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* [[PWY-6362]]
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* [[PWY-6361]]
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* [[PWY-4661]]
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* [[PWY-6369]]
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* [[PWY-6554]]
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* [[PWY-6372]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=604771}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25576 25576]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=610605}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03222 R03222]
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{{#set: centisome position=12.275733    }}
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* UNIPROT:
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{{#set: common name=Esi_0020_0075|Esi0020_0075}}
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** [http://www.uniprot.org/uniprot/P50336 P50336]
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{{#set: reaction associated=RXN-7163}}
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** [http://www.uniprot.org/uniprot/Q49404 Q49404]
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{{#set: pathway associated=PWY-6362|PWY-6361|PWY-4661|PWY-6369|PWY-6554|PWY-6372}}
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** [http://www.uniprot.org/uniprot/Q9CHX0 Q9CHX0]
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** [http://www.uniprot.org/uniprot/P0ACB4 P0ACB4]
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** [http://www.uniprot.org/uniprot/Q7M1R6 Q7M1R6]
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** [http://www.uniprot.org/uniprot/P51175 P51175]
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** [http://www.uniprot.org/uniprot/O24163 O24163]
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** [http://www.uniprot.org/uniprot/O24164 O24164]
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** [http://www.uniprot.org/uniprot/O64384 O64384]
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** [http://www.uniprot.org/uniprot/O64385 O64385]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=protoporphyrinogen oxidase, putative chloroplast precursor}}
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{{#set: ec number=EC-1.3.3.4}}
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{{#set: gene associated=Ec-25_003100}}
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{{#set: in pathway=PWY0-1415|HEME-BIOSYNTHESIS-II|CHLOROPHYLL-SYN|PWY-7159}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 14:57, 21 March 2018

Gene Ec-18_000620

  • left end position:
    • 604771
  • transcription direction:
    • POSITIVE
  • right end position:
    • 610605
  • centisome position:
    • 12.275733
  • Synonym(s):
    • Esi_0020_0075
    • Esi0020_0075

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=2.4.1.83-RXN&oldid=23066"