Difference between revisions of "Ec-07 000310"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.8-RXN 3.2.1.8-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Endo-1,4-beta-xylanase,...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2144 RXN0-2144] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.8-RXN 3.2.1.8-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2144 RXN0-2144] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** Endo-1,4-beta-xylanase, family GH10
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.2.1.8 EC-3.2.1.8]
+
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** n [[WATER]][c] '''+''' 1 [[1-4-beta-Xylan]][c] '''=>''' n [[1-4-D-xylooligosaccharides]][c]
+
** 1 [[b-Hydroxy-cis-D5-dodecenoyl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Trans-D3-cis-D5-dodecenoyl-ACPs]][c]
 
* With common name(s):
 
* With common name(s):
−
** n H2O[c] '''+''' 1 a (1→4)-β-D-xylan[c] '''=>''' n a (1->4)-β-D-xylan oligosaccharide[c]
+
** 1 a (3R,5Z)-3-hydroxy-dodec-5-enoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a (3E,5Z)-dodeca-3,5-dienoyl-[acp][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Ec-07_005310]]
 
−
** ESILICULOSUS_GENOME
 
−
***EC-NUMBER
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6784]], cellulose and hemicellulose degradation (cellulolosome): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6784 PWY-6784]
+
* [[PWY0-862]], (5Z)-dodec-5-enoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-862 PWY0-862]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[gap-filling]]
−
** [[pathwaytools]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[esiliculosus_genome]]
+
*** Tool: [[meneco]]
 +
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P10478 P10478]
 
−
** [http://www.uniprot.org/uniprot/Q9R5M7 Q9R5M7]
 
−
** [http://www.uniprot.org/uniprot/Q7M519 Q7M519]
 
−
** [http://www.uniprot.org/uniprot/Q7M520 Q7M520]
 
−
** [http://www.uniprot.org/uniprot/P35809 P35809]
 
−
** [http://www.uniprot.org/uniprot/Q7M513 Q7M513]
 
−
** [http://www.uniprot.org/uniprot/Q7M0W8 Q7M0W8]
 
−
** [http://www.uniprot.org/uniprot/P23556 P23556]
 
−
** [http://www.uniprot.org/uniprot/Q7M4V8 Q7M4V8]
 
−
** [http://www.uniprot.org/uniprot/Q9R5M6 Q9R5M6]
 
−
** [http://www.uniprot.org/uniprot/Q7M0X0 Q7M0X0]
 
−
** [http://www.uniprot.org/uniprot/Q7M0W9 Q7M0W9]
 
−
** [http://www.uniprot.org/uniprot/P45703 P45703]
 
−
** [http://www.uniprot.org/uniprot/P18429 P18429]
 
−
** [http://www.uniprot.org/uniprot/P40943 P40943]
 
−
** [http://www.uniprot.org/uniprot/P54865 P54865]
 
−
** [http://www.uniprot.org/uniprot/Q00177 Q00177]
 
−
** [http://www.uniprot.org/uniprot/P79046 P79046]
 
−
** [http://www.uniprot.org/uniprot/O83007 O83007]
 
−
** [http://www.uniprot.org/uniprot/Q9UUQ2 Q9UUQ2]
 
−
** [http://www.uniprot.org/uniprot/Q9HFA4 Q9HFA4]
 
−
** [http://www.uniprot.org/uniprot/Q9F1V3 Q9F1V3]
 
−
** [http://www.uniprot.org/uniprot/Q9AJR9 Q9AJR9]
 
−
** [http://www.uniprot.org/uniprot/P29417 P29417]
 
−
** [http://www.uniprot.org/uniprot/P26514 P26514]
 
−
** [http://www.uniprot.org/uniprot/P26220 P26220]
 
−
** [http://www.uniprot.org/uniprot/Q9R5P8 Q9R5P8]
 
−
** [http://www.uniprot.org/uniprot/Q9R5P9 Q9R5P9]
 
−
** [http://www.uniprot.org/uniprot/P09850 P09850]
 
−
** [http://www.uniprot.org/uniprot/P14768 P14768]
 
−
** [http://www.uniprot.org/uniprot/P45796 P45796]
 
−
** [http://www.uniprot.org/uniprot/P29126 P29126]
 
−
** [http://www.uniprot.org/uniprot/P29127 P29127]
 
−
** [http://www.uniprot.org/uniprot/Q02244 Q02244]
 
−
** [http://www.uniprot.org/uniprot/P40944 P40944]
 
−
** [http://www.uniprot.org/uniprot/P55334 P55334]
 
−
** [http://www.uniprot.org/uniprot/Q56013 Q56013]
 
−
** [http://www.uniprot.org/uniprot/Q59256 Q59256]
 
−
** [http://www.uniprot.org/uniprot/P55328 P55328]
 
−
** [http://www.uniprot.org/uniprot/Q01426 Q01426]
 
−
** [http://www.uniprot.org/uniprot/P55331 P55331]
 
−
** [http://www.uniprot.org/uniprot/Q59257 Q59257]
 
−
** [http://www.uniprot.org/uniprot/P51584 P51584]
 
−
** [http://www.uniprot.org/uniprot/P49942 P49942]
 
−
** [http://www.uniprot.org/uniprot/P55333 P55333]
 
−
** [http://www.uniprot.org/uniprot/P55332 P55332]
 
−
** [http://www.uniprot.org/uniprot/Q59790 Q59790]
 
−
** [http://www.uniprot.org/uniprot/Q59300 Q59300]
 
−
** [http://www.uniprot.org/uniprot/Q59301 Q59301]
 
−
** [http://www.uniprot.org/uniprot/Q59674 Q59674]
 
−
** [http://www.uniprot.org/uniprot/Q59675 Q59675]
 
−
** [http://www.uniprot.org/uniprot/Q60037 Q60037]
 
−
** [http://www.uniprot.org/uniprot/Q12579 Q12579]
 
−
** [http://www.uniprot.org/uniprot/Q12580 Q12580]
 
−
** [http://www.uniprot.org/uniprot/Q60046 Q60046]
 
−
** [http://www.uniprot.org/uniprot/P93185 P93185]
 
−
** [http://www.uniprot.org/uniprot/P93186 P93186]
 
−
** [http://www.uniprot.org/uniprot/P93187 P93187]
 
−
** [http://www.uniprot.org/uniprot/Q12603 Q12603]
 
−
** [http://www.uniprot.org/uniprot/O69230 O69230]
 
−
** [http://www.uniprot.org/uniprot/O30426 O30426]
 
−
** [http://www.uniprot.org/uniprot/O52373 O52373]
 
−
** [http://www.uniprot.org/uniprot/Q59278 Q59278]
 
−
** [http://www.uniprot.org/uniprot/Q9RKN6 Q9RKN6]
 
−
** [http://www.uniprot.org/uniprot/P00694 P00694]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Endo-1,4-beta-xylanase, family GH10}}
+
{{#set: ec number=EC-4.2.1.59}}
−
{{#set: ec number=EC-3.2.1.8}}
+
{{#set: in pathway=PWY0-862}}
−
{{#set: gene associated=Ec-07_005310}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: in pathway=PWY-6784}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction source=esiliculosus_genome}}
+

Revision as of 21:44, 17 March 2018

Reaction RXN0-2144

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Pathways

  • PWY0-862, (5Z)-dodec-5-enoate biosynthesis: PWY0-862
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-07_000310&oldid=10177"