Difference between revisions of "PRPPAMIDOTRANS-RXN"

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(Created page with "Category:Gene == Gene Ec-02_003170 == * left end position: ** 3494720 * transcription direction: ** NEGATIVE * right end position: ** 3517080 * centisome position: ** 53.5...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRPPAMIDOTRANS-RXN PRPPAMIDOTRANS-RXN] == * direction: ** REVERSIBLE * common name: ** Class II glu...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-02_003170 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRPPAMIDOTRANS-RXN PRPPAMIDOTRANS-RXN] ==
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* left end position:
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* direction:
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** 3494720
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** REVERSIBLE
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* transcription direction:
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* common name:
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** NEGATIVE
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** Class II glutamine amidotransferase domain
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* right end position:
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** Amidophosphoribosyltransferase
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** 3517080
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.4.2.14 EC-2.4.2.14]
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** 53.536026   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0209_0042
 
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** Esi0209_0042
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[PEROXID-RXN]]
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* With identifiers:
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** Source: [[annotation-esiliculosus_genome]]
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** 1 [[PPI]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''<=>''' 1 [[PRPP]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[GLN]][c]
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*** Assignment: go-term
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* With common name(s):
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* Reaction: [[RXN-14240]]
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** 1 diphosphate[c] '''+''' 1 L-glutamate[c] '''+''' 1 5-phospho-&beta;-D-ribosylamine[c] '''<=>''' 1 5-phospho-&alpha;-D-ribose 1-diphosphate[c] '''+''' 1 H2O[c] '''+''' 1 L-glutamine[c]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: go-term
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== Genes associated with this reaction  ==
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* Reaction: [[RXN-15288]]
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-07_005050]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: go-term
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*** Assignment: EC-NUMBER
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* Reaction: [[RXN-17352]]
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-02_005190]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: go-term
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*** Assignment: EC-NUMBER
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* Reaction: [[RXN-8635]]
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** Source: [[orthology-aragem]]
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== Pathways  ==
 +
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
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** '''5''' reactions found over '''9''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
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* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: go-term
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*** Tool: [[pathwaytools]]
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== Pathways associated ==
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* [[PWY-7214]]
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* [[PWY-6824]]
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* [[PWY-7445]]
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* [[PWY-5469]]
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* [[PWY-5466]]
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* [[PWY-5461]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=3494720}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14905 14905]
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{{#set: right end position=3517080}}
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* LIGAND-RXN:
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{{#set: centisome position=53.536026    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R01072 R01072]
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{{#set: common name=Esi_0209_0042|Esi0209_0042}}
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* UNIPROT:
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{{#set: reaction associated=PEROXID-RXN|RXN-14240|RXN-15288|RXN-17352|RXN-8635}}
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** [http://www.uniprot.org/uniprot/P28173 P28173]
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{{#set: pathway associated=PWY-7214|PWY-6824|PWY-7445|PWY-5469|PWY-5466|PWY-5461}}
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** [http://www.uniprot.org/uniprot/P35433 P35433]
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** [http://www.uniprot.org/uniprot/Q06203 Q06203]
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** [http://www.uniprot.org/uniprot/O29388 O29388]
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** [http://www.uniprot.org/uniprot/O67236 O67236]
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** [http://www.uniprot.org/uniprot/P65829 P65829]
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** [http://www.uniprot.org/uniprot/O57979 O57979]
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** [http://www.uniprot.org/uniprot/Q9X0X4 Q9X0X4]
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** [http://www.uniprot.org/uniprot/Q9RXT6 Q9RXT6]
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** [http://www.uniprot.org/uniprot/Q9K0C4 Q9K0C4]
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** [http://www.uniprot.org/uniprot/Q9V253 Q9V253]
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** [http://www.uniprot.org/uniprot/Q9PIT3 Q9PIT3]
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** [http://www.uniprot.org/uniprot/Q57657 Q57657]
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** [http://www.uniprot.org/uniprot/Q9JVC9 Q9JVC9]
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** [http://www.uniprot.org/uniprot/O26742 O26742]
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** [http://www.uniprot.org/uniprot/P43854 P43854]
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** [http://www.uniprot.org/uniprot/P35853 P35853]
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** [http://www.uniprot.org/uniprot/P41390 P41390]
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** [http://www.uniprot.org/uniprot/Q27601 Q27601]
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** [http://www.uniprot.org/uniprot/Q38999 Q38999]
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** [http://www.uniprot.org/uniprot/P04046 P04046]
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** [http://www.uniprot.org/uniprot/Q55621 Q55621]
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** [http://www.uniprot.org/uniprot/Q55038 Q55038]
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** [http://www.uniprot.org/uniprot/Q9STG9 Q9STG9]
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** [http://www.uniprot.org/uniprot/Q9T0J5 Q9T0J5]
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** [http://www.uniprot.org/uniprot/P52418 P52418]
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** [http://www.uniprot.org/uniprot/P52419 P52419]
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** [http://www.uniprot.org/uniprot/Q22134 Q22134]
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** [http://www.uniprot.org/uniprot/Q9ZB05 Q9ZB05]
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** [http://www.uniprot.org/uniprot/P00497 P00497]
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** [http://www.uniprot.org/uniprot/P0AG16 P0AG16]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=Class II glutamine amidotransferase domain}}
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{{#set: common name=Amidophosphoribosyltransferase}}
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{{#set: ec number=EC-2.4.2.14}}
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{{#set: gene associated=Ec-07_005050|Ec-02_005190}}
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{{#set: in pathway=PWY-6121|PWY-6122|PWY-7282|PWY-6277}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:00, 21 March 2018

Reaction PRPPAMIDOTRANS-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • Class II glutamine amidotransferase domain
    • Amidophosphoribosyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 diphosphate[c] + 1 L-glutamate[c] + 1 5-phospho-β-D-ribosylamine[c] <=> 1 5-phospho-α-D-ribose 1-diphosphate[c] + 1 H2O[c] + 1 L-glutamine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6121, 5-aminoimidazole ribonucleotide biosynthesis I: PWY-6121
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6122, 5-aminoimidazole ribonucleotide biosynthesis II: PWY-6122
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7282, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): PWY-7282
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-6277, superpathway of 5-aminoimidazole ribonucleotide biosynthesis: PWY-6277
    • 5 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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