Difference between revisions of "RXN-17780"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?obje...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17780 RXN-17780] == * direction: ** LEFT-TO-RIGHT * common name: ** enoyl-Coenzyme A hydratase/...")
 
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17780 RXN-17780] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
+
** LEFT-TO-RIGHT
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
+
 
* common name:
 
* common name:
−
** tRNA charging
+
** enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase
 +
** ClpP/crotonase-like domain
 +
** Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/4.2.1.17 EC-4.2.1.17]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''21''' reactions found over '''21''' reactions in the full pathway
+
* With identifiers:
−
* [[ALANINE--TRNA-LIGASE-RXN]]
+
** 1 [[CPD-19170]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-19168]][c]
−
** 3 associated gene(s):
+
* With common name(s):
−
*** [[Ec-20_000890]]
+
** 1 (2E,7Z)-hexadecenoyl-CoA[c] '''+''' 1 H2O[c] '''=>''' 1 (S)-3-hydroxy-(7Z)-hexadecenoyl-CoA[c]
−
*** [[Ec-07_007070]]
+
 
−
*** [[Ec-01_006770]]
+
== Genes associated with this reaction  ==
−
** 1 reconstruction source(s) associated:
+
Genes have been associated with this reaction based on different elements listed below.
−
*** [[annotation-esiliculosus_genome]]
+
* Gene: [[Ec-16_003560]]
−
* [[ARGININE--TRNA-LIGASE-RXN]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** 2 associated gene(s):
+
*** Assignment: EC-NUMBER
−
*** [[Ec-01_003640]]
+
* Gene: [[Ec-06_001380]]
−
*** [[Ec-03_001410]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** 1 reconstruction source(s) associated:
+
*** Assignment: EC-NUMBER
−
*** [[annotation-esiliculosus_genome]]
+
* Gene: [[Ec-14_006530]]
−
* [[ASPARAGINE--TRNA-LIGASE-RXN]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** 1 associated gene(s):
+
*** Assignment: AUTOMATED-NAME-MATCH
−
*** [[Ec-16_001810]]
+
* Gene: [[Ec-16_001250]]
−
** 1 reconstruction source(s) associated:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[annotation-esiliculosus_genome]]
+
*** Assignment: EC-NUMBER
−
* [[ASPARTATE--TRNA-LIGASE-RXN]]
+
== Pathways  ==
−
** 2 associated gene(s):
+
== Reconstruction information  ==
−
*** [[Ec-06_003810]]
+
* Category: [[annotation]]
−
*** [[Ec-19_005440]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** 1 reconstruction source(s) associated:
+
*** Tool: [[pathwaytools]]
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[CYSTEINE--TRNA-LIGASE-RXN]]
+
−
** 3 associated gene(s):
+
−
*** [[Ec-10_004180]]
+
−
*** [[Ec-02_002270]]
+
−
*** [[Ec-12_001440]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[GLURS-RXN]]
+
−
** 1 associated gene(s):
+
−
*** [[Ec-06_008480]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[GLUTAMINE--TRNA-LIGASE-RXN]]
+
−
** 2 associated gene(s):
+
−
*** [[Ec-10_000780]]
+
−
*** [[Ec-17_003970]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[GLYCINE--TRNA-LIGASE-RXN]]
+
−
** 3 associated gene(s):
+
−
*** [[Ec-07_006780]]
+
−
*** [[Ec-07_006790]]
+
−
*** [[Ec-14_006280]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[HISTIDINE--TRNA-LIGASE-RXN]]
+
−
** 1 associated gene(s):
+
−
*** [[Ec-11_004790]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[ISOLEUCINE--TRNA-LIGASE-RXN]]
+
−
** 2 associated gene(s):
+
−
*** [[Ec-12_001710]]
+
−
*** [[Ec-06_008740]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[LEUCINE--TRNA-LIGASE-RXN]]
+
−
** 2 associated gene(s):
+
−
*** [[Ec-12_001400]]
+
−
*** [[Ec-06_008730]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[LYSINE--TRNA-LIGASE-RXN]]
+
−
** 2 associated gene(s):
+
−
*** [[Ec-19_000900]]
+
−
*** [[Ec-01_005790]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[METHIONINE--TRNA-LIGASE-RXN]]
+
−
** 2 associated gene(s):
+
−
*** [[Ec-16_002540]]
+
−
*** [[Ec-18_004570]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[PHENYLALANINE--TRNA-LIGASE-RXN]]
+
−
** 4 associated gene(s):
+
−
*** [[Ec-15_003330]]
+
−
*** [[Ec-06_008260]]
+
−
*** [[Ec-02_005310]]
+
−
*** [[Ec-27_001900]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[PROLINE--TRNA-LIGASE-RXN]]
+
−
** 2 associated gene(s):
+
−
*** [[Ec-26_002190]]
+
−
*** [[Ec-08_005570]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[RXN-16165]]
+
−
** 2 associated gene(s):
+
−
*** [[Ec-16_002540]]
+
−
*** [[Ec-18_004570]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[SERINE--TRNA-LIGASE-RXN]]
+
−
** 2 associated gene(s):
+
−
*** [[Ec-24_004300]]
+
−
*** [[Ec-08_002360]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[THREONINE--TRNA-LIGASE-RXN]]
+
−
** 1 associated gene(s):
+
−
*** [[Ec-05_005060]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[TRYPTOPHAN--TRNA-LIGASE-RXN]]
+
−
** 1 associated gene(s):
+
−
*** [[Ec-08_005870]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[TYROSINE--TRNA-LIGASE-RXN]]
+
−
** 2 associated gene(s):
+
−
*** [[Ec-18_001870]]
+
−
*** [[Ec-01_009160]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[VALINE--TRNA-LIGASE-RXN]]
+
−
** 2 associated gene(s):
+
−
*** [[Ec-08_004480]]
+
−
*** [[Ec-12_005070]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
== Reaction(s) not found ==
+
 
== External links  ==
 
== External links  ==
−
* ECOCYC:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
{{#set: common name=enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase}}
−
{{#set: taxonomic range=TAX-2759}}
+
{{#set: common name=ClpP/crotonase-like domain}}
−
{{#set: taxonomic range=TAX-2}}
+
{{#set: common name=Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ}}
−
{{#set: taxonomic range=TAX-2157}}
+
{{#set: ec number=EC-4.2.1.17}}
−
{{#set: common name=tRNA charging}}
+
{{#set: gene associated=Ec-16_003560|Ec-06_001380|Ec-14_006530|Ec-16_001250}}
−
{{#set: reaction found=21}}
+
{{#set: in pathway=}}
−
{{#set: total reaction=21}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: completion rate=100.0}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:00, 21 March 2018

Reaction RXN-17780

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase
    • ClpP/crotonase-like domain
    • Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (2E,7Z)-hexadecenoyl-CoA[c] + 1 H2O[c] => 1 (S)-3-hydroxy-(7Z)-hexadecenoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-17780&oldid=23799"