Difference between revisions of "DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12195 RXN-12195] == * direction: ** LEFT-TO-RIGHT * common name: ** nucleoside-triphosphatase *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN] == * direction: ** LEFT-...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12195 RXN-12195] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** nucleoside-triphosphatase
+
** DNA photolyase
 +
** deoxyribodipyrimidine photo-lyase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.6.1.15 EC-3.6.1.15]
+
** [http://enzyme.expasy.org/EC/4.1.99.3 EC-4.1.99.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[CTP]][c] '''=>''' 1 [[CDP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
+
** 1 [[DNA-With-Pyrimidine-Dimers]][c] '''=>''' 1 [[DNA-Adjacent-Pyrimidines]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 CTP[c] '''=>''' 1 CDP[c] '''+''' 1 H+[c] '''+''' 1 phosphate[c]
+
**
−
 
+
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-05_005340]]
+
* Gene: [[Ec-01_008100]]
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: GO-TERM
+
−
* Gene: [[Ec-03_004860]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: GO-TERM
+
−
* Gene: [[Ec-02_005730]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: GO-TERM
+
−
* Gene: [[Ec-17_000870]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: GO-TERM
+
−
* Gene: [[Ec-18_004660]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: GO-TERM
+
−
* Gene: [[Ec-28_000420]]
+
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[Ec-03_001180]]
+
* Gene: [[Ec-10_005990]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[Ec-01_003690]]
+
* Gene: [[Ec-16_001260]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[Ec-06_005470]]
+
* Gene: [[Ec-01_008080]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 59: Line 36:
 
== External links  ==
 
== External links  ==
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00569 R00569]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00034 R00034]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P12769 P12769]
 +
** [http://www.uniprot.org/uniprot/Q9JSP8 Q9JSP8]
 +
** [http://www.uniprot.org/uniprot/Q9HQ46 Q9HQ46]
 +
** [http://www.uniprot.org/uniprot/P12768 P12768]
 +
** [http://www.uniprot.org/uniprot/P27526 P27526]
 +
** [http://www.uniprot.org/uniprot/P25078 P25078]
 +
** [http://www.uniprot.org/uniprot/Q43125 Q43125]
 +
** [http://www.uniprot.org/uniprot/P40115 P40115]
 +
** [http://www.uniprot.org/uniprot/Q28811 Q28811]
 +
** [http://www.uniprot.org/uniprot/Q24443 Q24443]
 +
** [http://www.uniprot.org/uniprot/Q91186 Q91186]
 +
** [http://www.uniprot.org/uniprot/Q42696 Q42696]
 +
** [http://www.uniprot.org/uniprot/P05066 P05066]
 +
** [http://www.uniprot.org/uniprot/O24020 O24020]
 +
** [http://www.uniprot.org/uniprot/O24374 O24374]
 +
** [http://www.uniprot.org/uniprot/P00914 P00914]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=nucleoside-triphosphatase}}
+
{{#set: common name=DNA photolyase}}
−
{{#set: ec number=EC-3.6.1.15}}
+
{{#set: common name=deoxyribodipyrimidine photo-lyase}}
−
{{#set: gene associated=Ec-05_005340|Ec-03_004860|Ec-02_005730|Ec-17_000870|Ec-18_004660|Ec-28_000420|Ec-03_001180|Ec-01_003690|Ec-06_005470}}
+
{{#set: ec number=EC-4.1.99.3}}
−
{{#set: in pathway=PWY-7210|PWY-7198|PWY-6545|PWY-7184}}
+
{{#set: gene associated=Ec-01_008100|Ec-10_005990|Ec-16_001260|Ec-01_008080}}
 +
{{#set: in pathway=}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:02, 21 March 2018

Reaction DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • DNA photolyase
    • deoxyribodipyrimidine photo-lyase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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