Difference between revisions of "RIBOFLAVIN-SYN-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-355 PWY3O-355] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVIN-SYN-RXN RIBOFLAVIN-SYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Riboflavi...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-355 PWY3O-355] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVIN-SYN-RXN RIBOFLAVIN-SYN-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** stearate biosynthesis III (fungi)
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** Riboflavin synthase, putative
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* ec number:
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** [http://enzyme.expasy.org/EC/2.5.1.9 EC-2.5.1.9]
 
* Synonym(s):
 
* Synonym(s):
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** fatty acid biosynthesis
 
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** stearic acid biosynthesis
 
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** octadecanoate biosynthesis
 
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** saturated fatty acid biosynthesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''3''' reactions found over '''6''' reactions in the full pathway
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* With identifiers:
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* [[RXN-9633]]
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** 2 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c] '''+''' 1 [[RIBOFLAVIN]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Ec-01_007100]]
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** 2 6,7-dimethyl-8-(1-D-ribityl)lumazine[c] '''+''' 1 H+[c] '''=>''' 1 5-amino-6-(D-ribitylamino)uracil[c] '''+''' 1 riboflavin[c]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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* [[RXN-9634]]
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Genes have been associated with this reaction based on different elements listed below.
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** 0 associated gene:
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* Gene: [[Ec-00_004570]]
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** 1 reconstruction source(s) associated:
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** Source: [[annotation-esiliculosus_genome]]
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*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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*** Assignment: EC-NUMBER
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* [[RXN3O-1803]]
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** Source: [[orthology-aragem]]
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** 4 associated gene(s):
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== Pathways  ==
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*** [[Ec-27_003480]]
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* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
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*** [[Ec-27_002090]]
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** '''4''' reactions found over '''10''' reactions in the full pathway
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*** [[Ec-12_000650]]
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* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
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*** [[Ec-12_000640]]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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** 2 reconstruction source(s) associated:
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* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
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*** [[annotation-esiliculosus_genome]]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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*** [[orthology-aragem]]
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== Reconstruction information  ==
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== Reaction(s) not found ==
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* Category: [[orthology]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9624 RXN-9624]
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** Source: [[orthology-aragem]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-5293 RXN3O-5293]
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*** Tool: [[pantograph]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-5304 RXN3O-5304]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-4751}}
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* RHEA:
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{{#set: common name=stearate biosynthesis III (fungi)}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20772 20772]
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{{#set: common name=fatty acid biosynthesis|stearic acid biosynthesis|octadecanoate biosynthesis|saturated fatty acid biosynthesis}}
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* LIGAND-RXN:
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{{#set: reaction found=3}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00066 R00066]
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{{#set: total reaction=6}}
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* UNIPROT:
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{{#set: completion rate=50.0}}
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** [http://www.uniprot.org/uniprot/P11998 P11998]
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** [http://www.uniprot.org/uniprot/P16440 P16440]
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** [http://www.uniprot.org/uniprot/Q9JUA6 Q9JUA6]
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** [http://www.uniprot.org/uniprot/O24854 O24854]
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** [http://www.uniprot.org/uniprot/O26237 O26237]
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** [http://www.uniprot.org/uniprot/P66037 P66037]
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** [http://www.uniprot.org/uniprot/Q9CGU8 Q9CGU8]
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** [http://www.uniprot.org/uniprot/Q9YDC5 Q9YDC5]
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** [http://www.uniprot.org/uniprot/Q9PN77 Q9PN77]
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** [http://www.uniprot.org/uniprot/Q9CGU6 Q9CGU6]
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** [http://www.uniprot.org/uniprot/P45273 P45273]
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** [http://www.uniprot.org/uniprot/Q9PIB9 Q9PIB9]
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** [http://www.uniprot.org/uniprot/O66529 O66529]
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** [http://www.uniprot.org/uniprot/Q58584 Q58584]
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** [http://www.uniprot.org/uniprot/O28856 O28856]
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** [http://www.uniprot.org/uniprot/Q01994 Q01994]
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** [http://www.uniprot.org/uniprot/P61714 P61714]
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** [http://www.uniprot.org/uniprot/P0AFU8 P0AFU8]
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** [http://www.uniprot.org/uniprot/P38145 P38145]
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** [http://www.uniprot.org/uniprot/Q55532 Q55532]
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** [http://www.uniprot.org/uniprot/P73527 P73527]
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** [http://www.uniprot.org/uniprot/Q44680 Q44680]
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** [http://www.uniprot.org/uniprot/Q44681 Q44681]
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** [http://www.uniprot.org/uniprot/P50854 P50854]
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** [http://www.uniprot.org/uniprot/P50856 P50856]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Riboflavin synthase, putative}}
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{{#set: ec number=EC-2.5.1.9}}
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{{#set: gene associated=Ec-00_004570}}
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{{#set: in pathway=PWY-6167|PWY-6168|RIBOSYN2-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:03, 21 March 2018

Reaction RIBOFLAVIN-SYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Riboflavin synthase, putative
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6167, flavin biosynthesis II (archaea): PWY-6167
    • 4 reactions found over 10 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi): PWY-6168
    • 6 reactions found over 9 reactions in the full pathway
  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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