Difference between revisions of "RXN-9386"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-902 RXN-902] == * direction: ** LEFT-TO-RIGHT * common name: ** ClpP/crotonase-like domain ** B...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9386 RXN-9386] == * direction: ** LEFT-TO-RIGHT * common name: ** Ribosomal protein L25/Gln-tRN...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-902 RXN-902] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9386 RXN-9386] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ClpP/crotonase-like domain
+
** Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
−
** Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ
+
** Glutamyl-tRNA Synthetase, chloroplast precursor
−
** enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.2.1.17 EC-4.2.1.17]
+
** [http://enzyme.expasy.org/EC/6.1.1.24 EC-6.1.1.24]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[E-PHENYLITACONYL-COA]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CARBOXYMETHYL-HYDROXYPHENYLPROPCOA]][c]
+
** 1 [[GLT]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[GLN-tRNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[L-glutamyl-tRNAGln]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 (E)-2-benzylidenesuccinyl-CoA[c] '''+''' 1 H2O[c] '''=>''' 1 2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA[c]
+
** 1 L-glutamate[c] '''+''' 1 H+[c] '''+''' 1 a tRNAgln[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 an L-glutamyl-[tRNAGln][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-06_001380]]
+
* Gene: [[Ec-06_008480]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[Ec-16_003560]]
+
* Gene: [[Ec-15_002360]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[Ec-16_001250]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Ec-14_006530]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-81]], toluene degradation to benzoyl-CoA (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-81 PWY-81]
+
* [[PWY-5921]], glutaminyl-tRNAgln biosynthesis via transamidation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5921 PWY-5921]
−
** '''2''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 39: Line 32:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R05599 R05599]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ClpP/crotonase-like domain}}
+
{{#set: common name=Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain}}
−
{{#set: common name=Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ}}
+
{{#set: common name=Glutamyl-tRNA Synthetase, chloroplast precursor}}
−
{{#set: common name=enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase}}
+
{{#set: ec number=EC-6.1.1.24}}
−
{{#set: ec number=EC-4.2.1.17}}
+
{{#set: gene associated=Ec-06_008480|Ec-15_002360}}
−
{{#set: gene associated=Ec-06_001380|Ec-16_003560|Ec-16_001250|Ec-14_006530}}
+
{{#set: in pathway=PWY-5921}}
−
{{#set: in pathway=PWY-81}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:06, 21 March 2018

Reaction RXN-9386

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
    • Glutamyl-tRNA Synthetase, chloroplast precursor
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-glutamate[c] + 1 H+[c] + 1 a tRNAgln[c] + 1 ATP[c] => 1 diphosphate[c] + 1 AMP[c] + 1 an L-glutamyl-[tRNAGln][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5921, glutaminyl-tRNAgln biosynthesis via transamidation: PWY-5921
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-9386&oldid=24509"