Difference between revisions of "PWY-6082"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUCONOLACT-RXN GLUCONOLACT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Lactonase domai...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6082 PWY-6082] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUCONOLACT-RXN GLUCONOLACT-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6082 PWY-6082] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** Lactonase domain-containing protein
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** alginate biosynthesis II (bacterial)
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* ec number:
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** [http://enzyme.expasy.org/EC/3.1.1.17 EC-3.1.1.17]
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* Synonym(s):
 
* Synonym(s):
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** bacterial alginate biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''7''' reactions in the full pathway
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** 1 [[WATER]][c] '''+''' 1 [[GLC-D-LACTONE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[GLUCONATE]][c]
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* [[GDP-MANNOSE-6-DEHYDROGENASE-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 H2O[c] '''+''' 1 D-glucono-1,5-lactone[c] '''=>''' 1 H+[c] '''+''' 1 D-gluconate[c]
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*** [[Ec-16_004740]]
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*** [[Ec-19_004880]]
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== Genes associated with this reaction  ==
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** 1 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-esiliculosus_genome]]
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* Gene: [[Ec-10_002500]]
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* [[RXN-9839]]
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** Source: [[annotation-esiliculosus_genome]]
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** 11 associated gene(s):
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[Ec-08_004820]]
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* Gene: [[Ec-21_001990]]
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*** [[Ec-25_001850]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-24_002750]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[Ec-20_004700]]
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== Pathways  ==
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*** [[Ec-11_000400]]
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* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221]
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*** [[Ec-07_000890]]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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*** [[Ec-12_000360]]
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* [[PWY-7165]], L-ascorbate biosynthesis VI (engineered pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7165 PWY-7165]
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*** [[Ec-06_006700]]
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** '''1''' reactions found over '''7''' reactions in the full pathway
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*** [[Ec-19_003150]]
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* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=NPGLUCAT-PWY NPGLUCAT-PWY]
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*** [[Ec-27_006700]]
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** '''4''' reactions found over '''9''' reactions in the full pathway
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*** [[Ec-09_003950]]
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* [[GLUCOSE1PMETAB-PWY]], glucose and glucose-1-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=GLUCOSE1PMETAB-PWY GLUCOSE1PMETAB-PWY]
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** 1 reconstruction source(s) associated:
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** '''3''' reactions found over '''5''' reactions in the full pathway
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*** [[annotation-esiliculosus_genome]]
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* [[PWY-5530]], sorbitol biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5530 PWY-5530]
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== Reaction(s) not found ==
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=ALGINATE-SYNTHASE-RXN ALGINATE-SYNTHASE-RXN]
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* [[DHGLUCONATE-PYR-CAT-PWY]], glucose degradation (oxidative): [http://metacyc.org/META/NEW-IMAGE?object=DHGLUCONATE-PYR-CAT-PWY DHGLUCONATE-PYR-CAT-PWY]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16462 RXN-16462]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=TRANS-RXN-269 TRANS-RXN-269]
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== Reconstruction information  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=TRANS-RXN-270 TRANS-RXN-270]
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* Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=TRANS-RXN-271 TRANS-RXN-271]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10440 10440]
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{{#set: common name=alginate biosynthesis II (bacterial)}}
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* LIGAND-RXN:
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{{#set: common name=bacterial alginate biosynthesis}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01519 R01519]
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{{#set: reaction found=2}}
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* UNIPROT:
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{{#set: total reaction=7}}
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** [http://www.uniprot.org/uniprot/Q01578 Q01578]
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{{#set: completion rate=29.0}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Lactonase domain-containing protein}}
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{{#set: ec number=EC-3.1.1.17}}
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{{#set: gene associated=Ec-10_002500|Ec-21_001990}}
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{{#set: in pathway=PWY-2221|PWY-7165|NPGLUCAT-PWY|GLUCOSE1PMETAB-PWY|PWY-5530|DHGLUCONATE-PYR-CAT-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 19:06, 21 March 2018

Pathway PWY-6082

  • taxonomic range:
  • common name:
    • alginate biosynthesis II (bacterial)
  • Synonym(s):
    • bacterial alginate biosynthesis

Reaction(s) found

2 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-6082&oldid=24542"