Difference between revisions of "SUC"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8991 RXN-8991] == * direction: ** REVERSIBLE * common name: ** 3-isopropylmalate dehydratase **...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SUC SUC] == * smiles: ** C(C([O-])=O)CC([O-])=O * inchi key: ** InChIKey=KDYFGRWQOYBRFD-UHFFFAO...")
 
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8991 RXN-8991] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SUC SUC] ==
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* direction:
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* smiles:
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** REVERSIBLE
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** C(C([O-])=O)CC([O-])=O
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* inchi key:
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** InChIKey=KDYFGRWQOYBRFD-UHFFFAOYSA-L
 
* common name:
 
* common name:
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** 3-isopropylmalate dehydratase
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** succinate
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** Aconitase/3-isopropylmalate dehydratase, swivel
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* molecular weight:
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** 116.073   
 
* Synonym(s):
 
* Synonym(s):
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** (2R,3S)-3-isopropylmalate hydro-lyase
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** succinic acid
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** β-isopropylmalate dehydratase
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** suc
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** α-isopropylmalate isomerase
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** succ
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** 3-isopropylmalate hydro-lyase
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** butanedioic acid
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** ethylenesuccinic acid
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN-15378]]
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** 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[CPD-9451]][c]
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* [[biomass_rxn]]
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* With common name(s):
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* [[RXN-14971]]
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** 1 (2R,3S)-3-isopropylmalate[c] '''<=>''' 1 H2O[c] '''+''' 1 2-isopropylmaleate[c]
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* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN]]
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== Reaction(s) known to produce the compound ==
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== Genes associated with this reaction  ==
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* [[RXN-7775]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-7648]]
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* Gene: [[Ec-13_001950]]
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* [[RXN-527]]
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** Source: [[orthology-aragem]]
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* [[RXN-113]]
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* Gene: [[Ec-12_000170]]
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* [[RXN490-3641]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[RXN-115]]
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*** Assignment: EC-NUMBER
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* [[O-SUCCHOMOSERLYASE-RXN]]
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** Source: [[orthology-aragem]]
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* [[RXN-171]]
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* Gene: [[Ec-sdr_f_000030]]
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* [[RXN-8450]]
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** Source: [[orthology-aragem]]
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* [[NARINGENIN-3-DIOXYGENASE-RXN]]
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== Pathways  ==
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* [[1.14.11.2-RXN]]
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* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
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* [[RXN66-470]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[RXN-7922]]
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* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
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* [[RXN-6550]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[RXN-602]]
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== Reconstruction information  ==
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* [[METBALT-RXN]]
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* Category: [[orthology]]
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* [[PEPTIDE-ASPARTATE-BETA-DIOXYGENASE-RXN]]
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** Source: [[orthology-aragem]]
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* [[RXN1F-93]]
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*** Tool: [[pantograph]]
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* [[RXN1F-168]]
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* Category: [[annotation]]
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* [[RXN0-5245]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[RXN1F-165]]
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*** Tool: [[pathwaytools]]
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* [[1.14.11.18-RXN]]
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* [[RXN1F-167]]
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* [[RXN1F-162]]
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* [[RXN1F-163]]
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== Reaction(s) of unknown directionality ==
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* [[FUMARATE-REDUCTASE-NADH-RXN]]
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* [[SUCCINATE--COA-LIGASE-GDP-FORMING-RXN]]
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* [[RXN-9384]]
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* [[ISOCIT-CLEAV-RXN]]
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* [[SUCCCOASYN-RXN]]
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* [[RXN-1744]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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* CAS : 110-15-6
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10676 10676]
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* BIGG : 33633
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* LIGAND-RXN:
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* PUBCHEM:
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** [http://www.genome.jp/dbget-bin/www_bget?R04001 R04001]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=160419 160419]
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{{#set: direction=REVERSIBLE}}
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* KNAPSACK : C00001205
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{{#set: common name=3-isopropylmalate dehydratase}}
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* HMDB : HMDB00254
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{{#set: common name=Aconitase/3-isopropylmalate dehydratase, swivel}}
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* LIGAND-CPD:
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{{#set: common name=(2R,3S)-3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase|&alpha;-isopropylmalate isomerase|3-isopropylmalate hydro-lyase}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00042 C00042]
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{{#set: gene associated=Ec-13_001950|Ec-12_000170|Ec-sdr_f_000030}}
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* CHEMSPIDER:
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{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
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** [http://www.chemspider.com/Chemical-Structure.140973.html 140973]
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{{#set: reconstruction category=orthology|annotation}}
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* CHEBI:
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=30031 30031]
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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* METABOLIGHTS : MTBLC30031
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{{#set: smiles=C(C([O-])=O)CC([O-])=O}}
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{{#set: inchi key=InChIKey=KDYFGRWQOYBRFD-UHFFFAOYSA-L}}
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{{#set: common name=succinate}}
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{{#set: molecular weight=116.073    }}
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{{#set: common name=succinic acid|suc|succ|butanedioic acid|ethylenesuccinic acid}}
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{{#set: consumed by=RXN-15378|biomass_rxn|RXN-14971|SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN}}
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{{#set: produced by=RXN-7775|RXN-7648|RXN-527|RXN-113|RXN490-3641|RXN-115|O-SUCCHOMOSERLYASE-RXN|RXN-171|RXN-8450|NARINGENIN-3-DIOXYGENASE-RXN|1.14.11.2-RXN|RXN66-470|RXN-7922|RXN-6550|RXN-602|METBALT-RXN|PEPTIDE-ASPARTATE-BETA-DIOXYGENASE-RXN|RXN1F-93|RXN1F-168|RXN0-5245|RXN1F-165|1.14.11.18-RXN|RXN1F-167|RXN1F-162|RXN1F-163}}
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{{#set: reversible reaction associated=FUMARATE-REDUCTASE-NADH-RXN|SUCCINATE--COA-LIGASE-GDP-FORMING-RXN|RXN-9384|ISOCIT-CLEAV-RXN|SUCCCOASYN-RXN|RXN-1744}}

Latest revision as of 19:07, 21 March 2018

Metabolite SUC

  • smiles:
    • C(C([O-])=O)CC([O-])=O
  • inchi key:
    • InChIKey=KDYFGRWQOYBRFD-UHFFFAOYSA-L
  • common name:
    • succinate
  • molecular weight:
    • 116.073
  • Synonym(s):
    • succinic acid
    • suc
    • succ
    • butanedioic acid
    • ethylenesuccinic acid

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 110-15-6
  • BIGG : 33633
  • PUBCHEM:
  • KNAPSACK : C00001205
  • HMDB : HMDB00254
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC30031
"C(C([O-])=O)CC([O-])=O" cannot be used as a page name in this wiki.




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