Difference between revisions of "RXN-9537"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TA...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9537 RXN-9537] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9537 RXN-9537] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-39119 TAX-39119]
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* ec number:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-38254 TAX-38254]
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-29197 TAX-29197]
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-38410 TAX-38410]
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** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5747 TAX-5747]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2864 TAX-2864]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-877183 TAX-877183]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2836 TAX-2836]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3027 TAX-3027]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2830 TAX-2830]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2833 TAX-2833]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3041 TAX-3041]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-33682]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2763 TAX-2763]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2870 TAX-2870]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2825 TAX-2825]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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* common name:
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** Calvin-Benson-Bassham cycle
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* Synonym(s):
 
* Synonym(s):
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** photosynthetic dark reactions
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** (3R)-hydroxymyristoyl-ACP dehydratase
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** photosynthetic CO2 fixation
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** reductive pentose phosphate pathway
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** Calvin cycle
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** carbon fixation
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** Calvin-Benson cycle
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== Reaction(s) found ==
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== Reaction Formula ==
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'''13''' reactions found over '''13''' reactions in the full pathway
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* With identifiers:
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* [[1.2.1.13-RXN]]
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** 1 [[R-3-hydroxymyristoyl-ACPs]][c] '''=>''' 1 [[Tetradec-2-enoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
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** 0 associated gene:
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* With common name(s):
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** 1 reconstruction source(s) associated:
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** 1 a (3R)-3-hydroxymyristoyl-[acp][c] '''=>''' 1 a trans tetradec-2-enoyl-[acp][c] '''+''' 1 H2O[c]
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*** [[annotation-esiliculosus_genome]]
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* [[1TRANSKETO-RXN]]
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== Genes associated with this reaction  ==
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** 1 associated gene(s):
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== Pathways  ==
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*** [[Ec-20_002600]]
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** 2 reconstruction source(s) associated:
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** '''28''' reactions found over '''31''' reactions in the full pathway
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*** [[annotation-esiliculosus_genome]]
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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*** [[orthology-aragem]]
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** '''20''' reactions found over '''31''' reactions in the full pathway
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* [[2TRANSKETO-RXN]]
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== Reconstruction information  ==
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** 1 associated gene(s):
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* Category: [[gap-filling]]
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*** [[Ec-20_002600]]
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** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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** 2 reconstruction source(s) associated:
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*** Tool: [[meneco]]
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*** [[annotation-esiliculosus_genome]]
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**** Comment: [[added for gapfilling]]
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*** [[orthology-aragem]]
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* [[F16ALDOLASE-RXN]]
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** 4 associated gene(s):
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*** [[Ec-10_004980]]
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*** [[Ec-01_008040]]
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*** [[Ec-10_000880]]
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*** [[Ec-14_001680]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[F16BDEPHOS-RXN]]
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** 7 associated gene(s):
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*** [[Ec-06_004200]]
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*** [[Ec-04_004710]]
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*** [[Ec-17_003090]]
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*** [[Ec-12_004070]]
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*** [[Ec-14_005760]]
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*** [[Ec-22_000360]]
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*** [[Ec-21_001790]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[PHOSGLYPHOS-RXN]]
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** 6 associated gene(s):
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*** [[Ec-12_004530]]
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*** [[Ec-21_005710]]
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*** [[Ec-21_004220]]
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*** [[Ec-08_002400]]
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*** [[Ec-12_004550]]
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*** [[Ec-01_001350]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[PHOSPHORIBULOKINASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-27_003910]]
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*** [[Ec-26_002450]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RIB5PISOM-RXN]]
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** 1 associated gene(s):
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*** [[Ec-08_003540]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN]]
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** 1 associated gene(s):
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*** [[Ec-12_007560]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RIBULP3EPIM-RXN]]
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** 2 associated gene(s):
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*** [[Ec-07_002390]]
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*** [[Ec-27_003930]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[SEDOBISALDOL-RXN]]
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** 1 associated gene(s):
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*** [[Ec-10_004980]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[SEDOHEPTULOSE-BISPHOSPHATASE-RXN]]
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** 3 associated gene(s):
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*** [[Ec-04_004710]]
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*** [[Ec-21_001790]]
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*** [[Ec-22_000360]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[TRIOSEPISOMERIZATION-RXN]]
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** 4 associated gene(s):
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*** [[Ec-08_000500]]
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*** [[Ec-24_000360]]
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*** [[Ec-03_002790]]
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*** [[Ec-23_004160]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
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== External links  ==
 
== External links  ==
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* PLANTCYC : CALVIN-PWY
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{{#set: direction=LEFT-TO-RIGHT}}
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* ARACYC:
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{{#set: ec number=EC-2.3.1.86}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: taxonomic range=TAX-1117}}
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{{#set: ec number=EC-4.2.1.59}}
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{{#set: taxonomic range=TAX-39119}}
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{{#set: common name=(3R)-hydroxymyristoyl-ACP dehydratase}}
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{{#set: taxonomic range=TAX-38254}}
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{{#set: in pathway=PWY-5971|PWY-5994}}
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{{#set: taxonomic range=TAX-29197}}
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{{#set: reconstruction category=gap-filling}}
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{{#set: taxonomic range=TAX-38410}}
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{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
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{{#set: taxonomic range=TAX-5747}}
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{{#set: reconstruction tool=meneco}}
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{{#set: taxonomic range=TAX-2864}}
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{{#set: reconstruction comment=added for gapfilling}}
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{{#set: taxonomic range=TAX-877183}}
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{{#set: taxonomic range=TAX-2836}}
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{{#set: taxonomic range=TAX-3027}}
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{{#set: taxonomic range=TAX-2830}}
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{{#set: taxonomic range=TAX-2833}}
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{{#set: taxonomic range=TAX-3041}}
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{{#set: taxonomic range=TAX-33682}}
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{{#set: taxonomic range=TAX-2763}}
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{{#set: taxonomic range=TAX-2870}}
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{{#set: taxonomic range=TAX-2825}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: common name=Calvin-Benson-Bassham cycle}}
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{{#set: common name=photosynthetic dark reactions|photosynthetic CO2 fixation|reductive pentose phosphate pathway|Calvin cycle|carbon fixation|Calvin-Benson cycle}}
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{{#set: reaction found=13}}
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{{#set: total reaction=13}}
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{{#set: completion rate=100.0}}
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Latest revision as of 20:07, 21 March 2018

Reaction RXN-9537

Reaction Formula

Genes associated with this reaction

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 28 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 20 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-9537&oldid=24692"