Difference between revisions of "GDPKIN-RXN"

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(Created page with "Category:Gene == Gene Ec-06_004450 == * left end position: ** 3753574 * transcription direction: ** POSITIVE * right end position: ** 3763138 * centisome position: ** 42.8...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPKIN-RXN GDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** nucleoside diphosphate ki...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-06_004450 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPKIN-RXN GDPKIN-RXN] ==
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* left end position:
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* direction:
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** 3753574
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** nucleoside diphosphate kinase
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* right end position:
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** Nucleoside diphosphate kinase
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** 3763138
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
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** 42.859985   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0062_0062
 
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** Esi0062_0062
 
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** Amt1;5
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[RXN-9615]]
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* With identifiers:
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** 1 [[GDP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[GTP]][c]
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* With common name(s):
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** 1 GDP[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 GTP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-11_005170]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-03_001380]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-22_003280]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-11_004330]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-26_003930]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-07_000140]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-04_001140]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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** Source: [[orthology-aragem]]
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== Pathways  ==
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* [[PWY-7221]], guanosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7221 PWY-7221]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PPGPPMET-PWY]], ppGpp biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PPGPPMET-PWY PPGPPMET-PWY]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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*** Tool: [[pathwaytools]]
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== Pathways associated ==
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== External links  ==
 
== External links  ==
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{{#set: left end position=3753574}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27686 27686]
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{{#set: right end position=3763138}}
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* LIGAND-RXN:
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{{#set: centisome position=42.859985    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00330 R00330]
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{{#set: common name=Esi_0062_0062|Esi0062_0062|Amt1;5}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=RXN-9615}}
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{{#set: common name=nucleoside diphosphate kinase}}
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{{#set: common name=Nucleoside diphosphate kinase}}
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{{#set: ec number=EC-2.7.4.6}}
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{{#set: gene associated=Ec-11_005170|Ec-03_001380|Ec-22_003280|Ec-11_004330|Ec-26_003930|Ec-07_000140|Ec-04_001140}}
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{{#set: in pathway=PWY-7221|PPGPPMET-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:08, 21 March 2018

Reaction GDPKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • nucleoside diphosphate kinase
    • Nucleoside diphosphate kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 GDP[c] + 1 ATP[c] => 1 ADP[c] + 1 GTP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7221, guanosine ribonucleotides de novo biosynthesis: PWY-7221
    • 4 reactions found over 4 reactions in the full pathway
  • PPGPPMET-PWY, ppGpp biosynthesis: PPGPPMET-PWY
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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