Difference between revisions of "PWY-6955"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPSYN-RXN GPPSYN-RXN] == * direction: ** REVERSIBLE * common name: ** prenyltransferase ** Farnesy...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6955 PWY-6955] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPSYN-RXN GPPSYN-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6955 PWY-6955] ==
−
* direction:
+
* taxonomic range:
−
** REVERSIBLE
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
−
** prenyltransferase
+
** lincomycin biosynthesis
−
** Farnesyl pyrophosphate synthase
+
−
** Prenyltransferase/squalene oxidase
+
−
** geranyl-diphosphate synthase
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.5.1.1 EC-2.5.1.1]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''1''' reactions found over '''8''' reactions in the full pathway
−
** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[CPD-4211]][c] '''<=>''' 1 [[PPI]][c] '''+''' 1 [[GERANYL-PP]][c]
+
* [[RXN-5861]]
−
* With common name(s):
+
** 2 associated gene(s):
−
** 1 isopentenyl diphosphate[c] '''+''' 1 dimethylallyl diphosphate[c] '''<=>''' 1 diphosphate[c] '''+''' 1 geranyl diphosphate[c]
+
*** [[Ec-12_008160]]
−
 
+
*** [[Ec-03_003140]]
−
== Genes associated with this reaction  ==
+
** 1 reconstruction source(s) associated:
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[annotation-esiliculosus_genome]]
−
* Gene: [[Ec-21_000990]]
+
== Reaction(s) not found ==
−
** Source: [[annotation-esiliculosus_genome]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12851 RXN-12851]
−
*** Assignment: GO-TERM
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12852 RXN-12852]
−
* Gene: [[Ec-14_006550]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12854 RXN-12854]
−
** Source: [[annotation-esiliculosus_genome]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12855 RXN-12855]
−
*** Assignment: GO-TERM
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12859 RXN-12859]
−
* Gene: [[Ec-08_002270]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12860 RXN-12860]
−
** Source: [[annotation-esiliculosus_genome]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=STIZOLOBINATE-SYNTHASE-RXN STIZOLOBINATE-SYNTHASE-RXN]
−
*** Assignment: GO-TERM
+
−
* Gene: [[Ec-00_007350]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: GO-TERM
+
−
* Gene: [[Ec-25_002110]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: GO-TERM
+
−
* Gene: [[Ec-10_003020]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
* Gene: [[Ec-18_000990]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Ec-26_003280]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: GO-TERM
+
−
* Gene: [[Ec-17_001240]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: GO-TERM
+
−
* Gene: [[Ec-16_004330]]
+
−
** Source: [[orthology-aragem]]
+
−
* Gene: [[Ec-07_006170]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
* Gene: [[Ec-24_003910]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: GO-TERM
+
−
== Pathways  ==
+
−
* [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
+
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
−
* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-7709]], (3R)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7709 PWY-7709]
+
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6383 PWY-6383]
+
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-7182]], linalool biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7182 PWY-7182]
+
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-7141]], (3S)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7141 PWY-7141]
+
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
+
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-5122]], geranyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5122 PWY-5122]
+
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
−
* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
+
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
−
* [[PWY-7659]], viridicatumtoxin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7659 PWY-7659]
+
−
** '''1''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7410]], ipsdienol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7410 PWY-7410]
+
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-aragem]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: taxonomic range=TAX-2}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22408 22408]
+
{{#set: common name=lincomycin biosynthesis}}
−
* LIGAND-RXN:
+
{{#set: reaction found=1}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01658 R01658]
+
{{#set: total reaction=8}}
−
* UNIPROT:
+
{{#set: completion rate=13.0}}
−
** [http://www.uniprot.org/uniprot/P08524 P08524]
+
−
** [http://www.uniprot.org/uniprot/P05369 P05369]
+
−
** [http://www.uniprot.org/uniprot/P14324 P14324]
+
−
** [http://www.uniprot.org/uniprot/P46376 P46376]
+
−
** [http://www.uniprot.org/uniprot/Q45220 Q45220]
+
−
** [http://www.uniprot.org/uniprot/P49350 P49350]
+
−
** [http://www.uniprot.org/uniprot/Q50891 Q50891]
+
−
** [http://www.uniprot.org/uniprot/P49349 P49349]
+
−
** [http://www.uniprot.org/uniprot/Q09152 Q09152]
+
−
** [http://www.uniprot.org/uniprot/P49351 P49351]
+
−
** [http://www.uniprot.org/uniprot/P49352 P49352]
+
−
** [http://www.uniprot.org/uniprot/Q43315 Q43315]
+
−
** [http://www.uniprot.org/uniprot/O24241 O24241]
+
−
** [http://www.uniprot.org/uniprot/O24242 O24242]
+
−
** [http://www.uniprot.org/uniprot/Q92334 Q92334]
+
−
** [http://www.uniprot.org/uniprot/Q92218 Q92218]
+
−
** [http://www.uniprot.org/uniprot/Q92235 Q92235]
+
−
** [http://www.uniprot.org/uniprot/Q92250 Q92250]
+
−
** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
+
−
** [http://www.uniprot.org/uniprot/P49353 P49353]
+
−
** [http://www.uniprot.org/uniprot/O04882 O04882]
+
−
** [http://www.uniprot.org/uniprot/O65004 O65004]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=prenyltransferase}}
+
−
{{#set: common name=Farnesyl pyrophosphate synthase}}
+
−
{{#set: common name=Prenyltransferase/squalene oxidase}}
+
−
{{#set: common name=geranyl-diphosphate synthase}}
+
−
{{#set: ec number=EC-2.5.1.1}}
+
−
{{#set: gene associated=Ec-21_000990|Ec-14_006550|Ec-08_002270|Ec-00_007350|Ec-25_002110|Ec-10_003020|Ec-18_000990|Ec-26_003280|Ec-17_001240|Ec-16_004330|Ec-07_006170|Ec-24_003910}}
+
−
{{#set: in pathway=PWY-7736|PWY-6859|PWY-7709|PWY-6383|PWY-7182|PWY-7141|PWY-5123|PWY-5122|PWY-7102|PWY-7659|PWY-7410}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:08, 21 March 2018

Pathway PWY-6955

  • taxonomic range:
  • common name:
    • lincomycin biosynthesis
  • Synonym(s):

Reaction(s) found

1 reactions found over 8 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-6955&oldid=24812"