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| − | [[Category:Reaction]] | + | [[Category:Pathway]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-DEHYDROGENASE-RXN GLUTAMATE-DEHYDROGENASE-RXN] == | + | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5135 PWY-5135] == |
| − | * direction: | + | * taxonomic range: |
| − | ** REVERSIBLE | + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3481 TAX-3481] |
| | * common name: | | * common name: |
| − | ** Glutamate dehydrogenase (NAD-dependent) | + | ** xanthohumol biosynthesis |
| − | * ec number:
| + | |
| − | ** [http://enzyme.expasy.org/EC/1.4.1.2 EC-1.4.1.2]
| + | |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction Formula == | + | == Reaction(s) found == |
| − | * With identifiers:
| + | '''2''' reactions found over '''4''' reactions in the full pathway |
| − | ** 1 [[NAD]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
| + | * [[4-COUMARATE--COA-LIGASE-RXN]] |
| − | * With common name(s): | + | ** 2 associated gene(s): |
| − | ** 1 NAD+[c] '''+''' 1 L-glutamate[c] '''+''' 1 H2O[c] '''<=>''' 1 ammonium[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 NADH[c] '''+''' 1 H+[c] | + | *** [[Ec-10_001480]] |
| − | | + | *** [[Ec-04_001280]] |
| − | == Genes associated with this reaction ==
| + | ** 1 reconstruction source(s) associated: |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | *** [[orthology-aragem]] |
| − | * Gene: [[Ec-12_008040]] | + | * [[NARINGENIN-CHALCONE-SYNTHASE-RXN]] |
| − | ** Source: [[orthology-aragem]] | + | ** 3 associated gene(s): |
| − | * Gene: [[Ec-06_008240]] | + | *** [[Ec-07_006660]] |
| − | ** Source: [[orthology-aragem]] | + | *** [[Ec-02_004580]] |
| − | * Gene: [[Ec-06_001980]] | + | *** [[Ec-07_003670]] |
| − | ** Source: [[annotation-esiliculosus_genome]] | + | ** 1 reconstruction source(s) associated: |
| − | *** Assignment: EC-NUMBER | + | *** [[orthology-aragem]] |
| − | == Pathways ==
| + | == Reaction(s) not found == |
| − | * [[GLUTAMATE-DEG1-PWY]], L-glutamate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-DEG1-PWY GLUTAMATE-DEG1-PWY] | + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-7820 RXN-7820] |
| − | ** '''1''' reactions found over '''1''' reactions in the full pathway | + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-7821 RXN-7821] |
| − | * [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate): [http://metacyc.org/META/NEW-IMAGE?object=ALACAT2-PWY ALACAT2-PWY]
| + | |
| − | ** '''2''' reactions found over '''3''' reactions in the full pathway | + | |
| − | * [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate): [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY] | + | |
| − | ** '''4''' reactions found over '''11''' reactions in the full pathway
| + | |
| − | * [[PWY-5022]], 4-aminobutanoate degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5022 PWY-5022]
| + | |
| − | ** '''1''' reactions found over '''7''' reactions in the full pathway | + | |
| − | * [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
| + | |
| − | ** '''11''' reactions found over '''18''' reactions in the full pathway | + | |
| − | * [[PWY-7126]], ethylene biosynthesis IV (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7126 PWY-7126]
| + | |
| − | ** '''1''' reactions found over '''3''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * Category: [[orthology]]
| + | |
| − | ** Source: [[orthology-aragem]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | * Category: [[annotation]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Tool: [[pathwaytools]]
| + | |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: taxonomic range=TAX-3481}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15133 15133]
| + | {{#set: common name=xanthohumol biosynthesis}} |
| − | * LIGAND-RXN:
| + | {{#set: reaction found=2}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R00243 R00243]
| + | {{#set: total reaction=4}} |
| − | * UNIPROT:
| + | {{#set: completion rate=50.0}} |
| − | ** [http://www.uniprot.org/uniprot/P20016 P20016]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P28997 P28997]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P41755 P41755]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9JTP6 Q9JTP6]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P00365 P00365]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P93541 P93541]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P80319 P80319]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P24295 P24295]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P27346 P27346]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P33327 P33327]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q43260 Q43260]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O04937 O04937]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q25415 Q25415]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O74024 O74024]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O59650 O59650]
| + | |
| − | {{#set: direction=REVERSIBLE}} | + | |
| − | {{#set: common name=Glutamate dehydrogenase (NAD-dependent)}} | + | |
| − | {{#set: ec number=EC-1.4.1.2}} | + | |
| − | {{#set: gene associated=Ec-12_008040|Ec-06_008240|Ec-06_001980}} | + | |
| − | {{#set: in pathway=GLUTAMATE-DEG1-PWY|ALACAT2-PWY|P162-PWY|PWY-5022|PWY-6728|PWY-7126}} | + | |
| − | {{#set: reconstruction category=orthology|annotation}}
| + | |
| − | {{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
| + | |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}}
| + | |
