Difference between revisions of "Biomass rxn"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5034 PWY-5034] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=biomass_rxn biomass_rxn] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * W...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5034 PWY-5034] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=biomass_rxn biomass_rxn] ==
* taxonomic range:
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* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** LEFT-TO-RIGHT
* common name:
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** GA12 biosynthesis
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* Synonym(s):
 
* Synonym(s):
** gibberellin A12 biosynthesis
 
  
== Reaction(s) found ==
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== Reaction Formula ==
'''3''' reactions found over '''6''' reactions in the full pathway
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* With identifiers:
* [[1.14.13.79-RXN]]
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** 0.029 [[GLYCOLLATE]][c] '''+''' 0.35 [[PHE]][c] '''+''' 0.65 [[THR]][c] '''+''' 18.85 [[GLT]][c] '''+''' 3.8 [[GLY]][c] '''+''' 26.6 [[L-ALPHA-ALANINE]][c] '''+''' 0.1 [[L-ORNITHINE]][c] '''+''' 2.375 [[GLYCEROL]][c] '''+''' 19.3055 [[CIT]][c] '''+''' 2.7615 [[GLC]][c] '''+''' 0.2 [[ILE]][c] '''+''' 0.85 [[VAL]][c] '''+''' 12.5 [[L-ASPARTATE]][c] '''+''' 0.35 [[LYS]][c] '''+''' 331.4 [[MANNITOL]][c] '''+''' 1.35 [[PRO]][c] '''+''' 0.878 [[SUC]][c] '''+''' 0.1 [[ARG]][c] '''+''' 0.3 [[MET]][c] '''+''' 0.75 [[ASN]][c] '''+''' 10.7 [[GLN]][c] '''+''' 9.37 [[THREO-DS-ISO-CITRATE]][c] '''+''' 0.1 [[HIS]][c] '''+''' 0.115 [[TRP]][c] '''+''' 0.125 [[TYR]][c] '''+''' 0.3 [[LEU]][c] '''+''' 0.01 [[4-AMINO-BUTYRATE]][c] '''+''' 0.3 [[CYS]][c] '''+''' 0.123 [[GLYCERATE]][c] '''+''' 3.35 [[SER]][c] '''=>''' 1 [[BIOMASS]][c]
** 3 associated gene(s):
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* With common name(s):
*** [[Ec-00_005820]]
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**
*** [[Ec-10_006240]]
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== Genes associated with this reaction  ==
*** [[Ec-00_005850]]
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Genes have been associated with this reaction based on different elements listed below.
** 1 reconstruction source(s) associated:
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* Gene: [[None]]
*** [[orthology-aragem]]
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** Source: [[manual-2_biomass_rxn]]
* [[RXN1F-160]]
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== Pathways  ==
** 3 associated gene(s):
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== Reconstruction information  ==
*** [[Ec-10_006240]]
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* Category: [[manual]]
*** [[Ec-00_005850]]
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** Source: [[manual-2_biomass_rxn]]
*** [[Ec-00_005820]]
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*** Comment: [[forfba]]
** 1 reconstruction source(s) associated:
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*** [[orthology-aragem]]
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* [[RXN1F-161]]
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** 3 associated gene(s):
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*** [[Ec-00_005820]]
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*** [[Ec-10_006240]]
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*** [[Ec-00_005850]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=1.14.13.78-RXN 1.14.13.78-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-5242 RXN-5242]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7580 RXN-7580]
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== External links  ==
 
== External links  ==
* ARACYC:
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{{#set: direction=LEFT-TO-RIGHT}}
** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5034 PWY-5034]
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{{#set: gene associated=None}}
{{#set: taxonomic range=TAX-33090}}
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{{#set: in pathway=}}
{{#set: common name=GA12 biosynthesis}}
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{{#set: reconstruction category=manual}}
{{#set: common name=gibberellin A12 biosynthesis}}
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{{#set: reconstruction source=manual-2_biomass_rxn}}
{{#set: reaction found=3}}
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{{#set: reconstruction comment=forfba}}
{{#set: total reaction=6}}
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{{#set: completion rate=50.0}}
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Latest revision as of 19:10, 21 March 2018

Reaction biomass_rxn

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links