Difference between revisions of "PWY-5168"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IPPISOM-RXN IPPISOM-RXN] == * direction: ** REVERSIBLE * common name: ** isopentenyl-diphosphate de...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5168 PWY-5168] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58024 TAX-5...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IPPISOM-RXN IPPISOM-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5168 PWY-5168] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58024 TAX-58024]
 
* common name:
 
* common name:
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** isopentenyl-diphosphate delta-isomerase type 1
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** ferulate and sinapate biosynthesis
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** isopentenyl-diphosphate delta-isomerase
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* ec number:
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** [http://enzyme.expasy.org/EC/5.3.3.2 EC-5.3.3.2]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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  '''1''' reactions found over '''4''' reactions in the full pathway
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** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''<=>''' 1 [[CPD-4211]][c]
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* [[RXN-1143]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 isopentenyl diphosphate[c] '''<=>''' 1 dimethylallyl diphosphate[c]
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*** [[Ec-01_004720]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-esiliculosus_genome]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) not found ==
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* Gene: [[Ec-11_001030]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1142 RXN-1142]
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** Source: [[annotation-esiliculosus_genome]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1241 RXN-1241]
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*** Assignment: GO-TERM
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8014 RXN-8014]
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* Gene: [[Ec-18_002690]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-aragem]]
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== Pathways ==
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* [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
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** '''7''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6383 PWY-6383]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524]
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** '''4''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* ARACYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23284 23284]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5168 PWY-5168]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-58024}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01123 R01123]
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{{#set: common name=ferulate and sinapate biosynthesis}}
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* UNIPROT:
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/P15496 P15496]
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{{#set: total reaction=4}}
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** [http://www.uniprot.org/uniprot/Q10132 Q10132]
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{{#set: completion rate=25.0}}
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** [http://www.uniprot.org/uniprot/Q38929 Q38929]
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** [http://www.uniprot.org/uniprot/Q42553 Q42553]
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** [http://www.uniprot.org/uniprot/P93355 P93355]
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** [http://www.uniprot.org/uniprot/O81691 O81691]
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** [http://www.uniprot.org/uniprot/Q9SAY0 Q9SAY0]
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** [http://www.uniprot.org/uniprot/O81660 O81660]
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** [http://www.uniprot.org/uniprot/O81659 O81659]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=isopentenyl-diphosphate delta-isomerase type 1}}
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{{#set: common name=isopentenyl-diphosphate delta-isomerase}}
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{{#set: ec number=EC-5.3.3.2}}
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{{#set: gene associated=Ec-11_001030|Ec-18_002690}}
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{{#set: in pathway=PWY-6174|PWY-6859|NONMEVIPP-PWY|PWY-7560|PWY-7391|PWY-5123|PWY-922|PWY-6383|PWY-7102|PWY-7524}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:10, 21 March 2018

Pathway PWY-5168

  • taxonomic range:
  • common name:
    • ferulate and sinapate biosynthesis
  • Synonym(s):

Reaction(s) found

1 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links



Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-5168&oldid=25089"