Difference between revisions of "PWY-1622"

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(Created page with "Category:Gene == Gene Ec-24_003910 == * left end position: ** 4284830 * transcription direction: ** POSITIVE * right end position: ** 4292393 * centisome position: ** 85.9...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
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[[Category:Gene]]
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[[Category:Pathway]]
== Gene Ec-24_003910 ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622] ==
* left end position:
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* taxonomic range:
** 4284830
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
* transcription direction:
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* common name:
** POSITIVE
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** formaldehyde assimilation I (serine pathway)
* right end position:
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** 4292393
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* centisome position:
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** 85.90842   
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* Synonym(s):
 
* Synonym(s):
** Esi_0109_0085
 
** Esi0109_0085
 
  
== Reactions associated ==
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== Reaction(s) found ==
* Reaction: [[4OHBENZOATE-OCTAPRENYLTRANSFER-RXN]]
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'''6''' reactions found over '''13''' reactions in the full pathway
** Source: [[annotation-esiliculosus_genome]]
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* [[2PGADEHYDRAT-RXN]]
*** Assignment: automated-name-match
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** 3 associated gene(s):
* Reaction: [[GPPSYN-RXN]]
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*** [[Ec-14_005400]]
** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-27_004000]]
*** Assignment: go-term
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*** [[Ec-26_004120]]
* Reaction: [[RXN-9003]]
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** 2 reconstruction source(s) associated:
** Source: [[orthology-aragem]]
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*** [[annotation-esiliculosus_genome]]
* Reaction: [[RXN-9384]]
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*** [[orthology-aragem]]
** Source: [[orthology-aragem]]
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* [[GLYOHMETRANS-RXN]]
* Reaction: [[RXN0-5180]]
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** 2 associated gene(s):
** Source: [[orthology-aragem]]
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*** [[Ec-14_004260]]
== Pathways associated ==
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*** [[Ec-24_002640]]
* [[PWY-7736]]
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** 1 reconstruction source(s) associated:
* [[PWY-7410]]
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*** [[annotation-esiliculosus_genome]]
* [[PWY-6859]]
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* [[MALATE-DEH-RXN]]
* [[PWY-7709]]
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** 2 associated gene(s):
* [[PWY-6383]]
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*** [[Ec-10_006200]]
* [[PWY-7235]]
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*** [[Ec-02_003100]]
* [[PWY-7182]]
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** 2 reconstruction source(s) associated:
* [[PWY-6708]]
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*** [[annotation-esiliculosus_genome]]
* [[PWY-7141]]
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*** [[orthology-aragem]]
* [[PWY-5123]]
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* [[PEPCARBOX-RXN]]
* [[PWY-5122]]
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** 1 associated gene(s):
* [[PWY-7102]]
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*** [[Ec-28_003470]]
* [[PWY-7659]]
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** 1 reconstruction source(s) associated:
* [[PWY-5870]]
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*** [[annotation-esiliculosus_genome]]
* [[PWY3O-19]]
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* [[RXN-15513]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
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* [[RXN-2881]]
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** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=GKI-RXN GKI-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=HYDROXYPYRUVATE-REDUCTASE-RXN HYDROXYPYRUVATE-REDUCTASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=MALATE--COA-LIGASE-RXN MALATE--COA-LIGASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=MALYL-COA-LYASE-RXN MALYL-COA-LYASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2802 RXN-2802]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=SERINE--GLYOXYLATE-AMINOTRANSFERASE-RXN SERINE--GLYOXYLATE-AMINOTRANSFERASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN]
 
== External links  ==
 
== External links  ==
{{#set: left end position=4284830}}
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{{#set: taxonomic range=TAX-2}}
{{#set: transcription direction=POSITIVE}}
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{{#set: common name=formaldehyde assimilation I (serine pathway)}}
{{#set: right end position=4292393}}
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{{#set: reaction found=6}}
{{#set: centisome position=85.90842    }}
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{{#set: total reaction=13}}
{{#set: common name=Esi_0109_0085|Esi0109_0085}}
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{{#set: completion rate=46.0}}
{{#set: reaction associated=4OHBENZOATE-OCTAPRENYLTRANSFER-RXN|GPPSYN-RXN|RXN-9003|RXN-9384|RXN0-5180}}
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{{#set: pathway associated=PWY-7736|PWY-7410|PWY-6859|PWY-7709|PWY-6383|PWY-7235|PWY-7182|PWY-6708|PWY-7141|PWY-5123|PWY-5122|PWY-7102|PWY-7659|PWY-5870|PWY3O-19}}
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Latest revision as of 19:12, 21 March 2018

Pathway PWY-1622

  • taxonomic range:
  • common name:
    • formaldehyde assimilation I (serine pathway)
  • Synonym(s):

Reaction(s) found

6 reactions found over 13 reactions in the full pathway

Reaction(s) not found

External links