|
|
| Line 1: |
Line 1: |
| − | [[Category:Reaction]] | + | [[Category:Gene]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] == | + | == Gene Ec-02_004910 == |
| − | * direction: | + | * left end position: |
| − | ** LEFT-TO-RIGHT | + | ** 5186554 |
| − | * common name: | + | * transcription direction: |
| − | ** coproporphyrinogen oxidase, putative chloroplast precursor | + | ** NEGATIVE |
| − | ** coproporphyrinogen oxidase (aerobic), putative chloroplast precursor | + | * right end position: |
| − | * ec number: | + | ** 5211228 |
| − | ** [http://enzyme.expasy.org/EC/1.3.3.3 EC-1.3.3.3] | + | * centisome position: |
| | + | ** 79.45343 |
| | * Synonym(s): | | * Synonym(s): |
| | + | ** Esi_0024_0087 |
| | + | ** Esi0024_0087 |
| | | | |
| − | == Reaction Formula == | + | == Reactions associated == |
| − | * With identifiers:
| + | * [[GUANYLCYC-RXN]] |
| − | ** 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 2 [[WATER]][c] '''+''' 2 [[CARBON-DIOXIDE]][c]
| + | ** esiliculosus_genome |
| − | * With common name(s):
| + | ***automated-name-match |
| − | ** 1 coproporphyrinogen III[c] '''+''' 2 H+[c] '''+''' 1 oxygen[c] '''=>''' 1 protoporphyrinogen IX[c] '''+''' 2 H2O[c] '''+''' 2 CO2[c]
| + | == Pathways associated == |
| − | | + | |
| − | == Genes associated with this reaction ==
| + | |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | |
| − | * [[Ec-19_005390]] | + | |
| − | ** ESILICULOSUS_GENOME | + | |
| − | ***EC-NUMBER | + | |
| − | ** [[pantograph]]-[[aragem]]
| + | |
| − | * [[Ec-08_001470]]
| + | |
| − | ** ESILICULOSUS_GENOME
| + | |
| − | ***EC-NUMBER
| + | |
| − | == Pathways == | + | |
| − | * [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
| + | |
| − | ** '''5''' reactions found over '''6''' reactions in the full pathway
| + | |
| − | * [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
| + | |
| − | ** '''4''' reactions found over '''4''' reactions in the full pathway
| + | |
| − | * [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
| + | |
| − | ** '''6''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | * [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
| + | |
| − | ** '''5''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * [[orthology]]:
| + | |
| − | ** [[pantograph]]:
| + | |
| − | *** [[aragem]]
| + | |
| − | * [[annotation]]:
| + | |
| − | ** [[pathwaytools]]:
| + | |
| − | *** [[esiliculosus_genome]]
| + | |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: left end position=5186554}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18257 18257]
| + | {{#set: transcription direction=NEGATIVE}} |
| − | * LIGAND-RXN:
| + | {{#set: right end position=5211228}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R03220 R03220]
| + | {{#set: centisome position=79.45343 }} |
| − | * UNIPROT:
| + | {{#set: common name=Esi_0024_0087|Esi0024_0087}} |
| − | ** [http://www.uniprot.org/uniprot/Q9RLE1 Q9RLE1]
| + | {{#set: reaction associated=GUANYLCYC-RXN}} |
| − | ** [http://www.uniprot.org/uniprot/P36552 P36552]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O25376 O25376]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P36553 P36553]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P33771 P33771]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P43899 P43899]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O25824 O25824]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P54304 P54304]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P11353 P11353]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q8X8G8 Q8X8G8]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9ZC86 Q9ZC86]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P36551 P36551]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P35055 P35055]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P43898 P43898]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P72848 P72848]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P73245 P73245]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P74132 P74132]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q51676 Q51676]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q42946 Q42946]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q42840 Q42840]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q39581 Q39581]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P95651 P95651]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9RFG1 Q9RFG1]
| + | |
| − | {{#set: direction=LEFT-TO-RIGHT}} | + | |
| − | {{#set: common name=coproporphyrinogen oxidase, putative chloroplast precursor}} | + | |
| − | {{#set: common name=coproporphyrinogen oxidase (aerobic), putative chloroplast precursor}} | + | |
| − | {{#set: ec number=EC-1.3.3.3}} | + | |
| − | {{#set: gene associated=Ec-19_005390|Ec-08_001470}} | + | |
| − | {{#set: in pathway=PWY0-1415|HEME-BIOSYNTHESIS-II|CHLOROPHYLL-SYN|PWY-7159}} | + | |
| − | {{#set: reconstruction category=orthology}}
| + | |
| − | {{#set: reconstruction tool=pantograph}}
| + | |
| − | {{#set: reconstruction source=aragem}}
| + | |
| − | {{#set: reconstruction category=annotation}}
| + | |
| − | {{#set: reconstruction tool=pathwaytools}}
| + | |
| − | {{#set: reconstruction source=esiliculosus_genome}}
| + | |
