Difference between revisions of "CYSTEINE--TRNA-LIGASE-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD0-1028 CPD0-1028] == * smiles: ** CC(=CCCC(C)=CCCC(C)=CCCC(C)=CCOP(=O)([O-])OP(=O)([O-])[O-]...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTEINE--TRNA-LIGASE-RXN CYSTEINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD0-1028 CPD0-1028] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTEINE--TRNA-LIGASE-RXN CYSTEINE--TRNA-LIGASE-RXN] ==
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* smiles:
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* direction:
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** CC(=CCCC(C)=CCCC(C)=CCCC(C)=CCOP(=O)([O-])OP(=O)([O-])[O-])C
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=OINNEUNVOZHBOX-KWBDAJKESA-K
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* common name:
 
* common name:
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** 2-cis,6-trans,10-trans-geranylgeranyl diphosphate
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** Cysteinyl-tRNA Synthetase
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* molecular weight:
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** Aminoacyl-tRNA synthetase, class 1a, anticodon-binding
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** 447.424   
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** Cysteinyl-tRNA synthetase/mycothiol ligase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.1.1.16 EC-6.1.1.16]
 
* Synonym(s):
 
* Synonym(s):
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** di-trans,poly-cis-geranylgeranyl diphosphate
 
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** ω,E,E,Z-geranylgeranyl diphosphate
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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== Reaction(s) of unknown directionality ==
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** 1 [[ATP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CYS-tRNAs]][c] '''+''' 1 [[CYS]][c] '''=>''' 1 [[Charged-CYS-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
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* [[RXN-13323]]
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* With common name(s):
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* [[RXN0-5180]]
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** 1 ATP[c] '''+''' 1 H+[c] '''+''' 1 a tRNAcys[c] '''+''' 1 L-cysteine[c] '''=>''' 1 an L-cysteinyl-[tRNAcys][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-10_004180]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-02_002270]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-12_001440]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25245826 25245826]
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** [http://www.genome.jp/dbget-bin/www_bget?R03650 R03650]
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* CHEBI:
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* UNIPROT:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=62639 62639]
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** [http://www.uniprot.org/uniprot/Q9PPB8 Q9PPB8]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/Q06752 Q06752]
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** [http://www.genome.jp/dbget-bin/www_bget?C11356 C11356]
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** [http://www.uniprot.org/uniprot/P43816 P43816]
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{{#set: smiles=CC(=CCCC(C)=CCCC(C)=CCCC(C)=CCOP(=O)([O-])OP(=O)([O-])[O-])C}}
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** [http://www.uniprot.org/uniprot/O29836 O29836]
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{{#set: inchi key=InChIKey=OINNEUNVOZHBOX-KWBDAJKESA-K}}
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** [http://www.uniprot.org/uniprot/Q9CEJ0 Q9CEJ0]
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{{#set: common name=2-cis,6-trans,10-trans-geranylgeranyl diphosphate}}
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** [http://www.uniprot.org/uniprot/O58370 O58370]
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{{#set: molecular weight=447.424    }}
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** [http://www.uniprot.org/uniprot/O83129 O83129]
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{{#set: common name=di-trans,poly-cis-geranylgeranyl diphosphate|ω,E,E,Z-geranylgeranyl diphosphate}}
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** [http://www.uniprot.org/uniprot/Q9ZE62 Q9ZE62]
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{{#set: reversible reaction associated=RXN-13323|RXN0-5180}}
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** [http://www.uniprot.org/uniprot/Q9ZKW6 Q9ZKW6]
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** [http://www.uniprot.org/uniprot/Q9WZH8 Q9WZH8]
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** [http://www.uniprot.org/uniprot/P41259 P41259]
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** [http://www.uniprot.org/uniprot/O51545 O51545]
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** [http://www.uniprot.org/uniprot/Q9Z6X4 Q9Z6X4]
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** [http://www.uniprot.org/uniprot/O67163 O67163]
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** [http://www.uniprot.org/uniprot/Q9JWJ3 Q9JWJ3]
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** [http://www.uniprot.org/uniprot/P47495 P47495]
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** [http://www.uniprot.org/uniprot/P75423 P75423]
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** [http://www.uniprot.org/uniprot/P74330 P74330]
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** [http://www.uniprot.org/uniprot/Q9UWP2 Q9UWP2]
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** [http://www.uniprot.org/uniprot/P21888 P21888]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Cysteinyl-tRNA Synthetase}}
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{{#set: common name=Aminoacyl-tRNA synthetase, class 1a, anticodon-binding}}
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{{#set: common name=Cysteinyl-tRNA synthetase/mycothiol ligase}}
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{{#set: ec number=EC-6.1.1.16}}
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{{#set: gene associated=Ec-10_004180|Ec-02_002270|Ec-12_001440}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:15, 21 March 2018

Reaction CYSTEINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Cysteinyl-tRNA Synthetase
    • Aminoacyl-tRNA synthetase, class 1a, anticodon-binding
    • Cysteinyl-tRNA synthetase/mycothiol ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 H+[c] + 1 a tRNAcys[c] + 1 L-cysteine[c] => 1 an L-cysteinyl-[tRNAcys][c] + 1 diphosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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