Difference between revisions of "TYROSINE-DECARBOXYLASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GST-RXN GST-RXN] == * direction: ** REVERSIBLE * common name: ** Thioredoxin-like fold ** Glutathio...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TYROSINE-DECARBOXYLASE-RXN TYROSINE-DECARBOXYLASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GST-RXN GST-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TYROSINE-DECARBOXYLASE-RXN TYROSINE-DECARBOXYLASE-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Thioredoxin-like fold
+
** Tyrosine Decarboxylase
−
** Glutathione S-transferase, C-terminal-like
+
−
** Membrane associated eicosanoid/glutathione metabolism-like domain
+
−
** Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein
+
−
** DSBA-like thioredoxin domain
+
−
** Glutathione S-transferase (GST)
+
−
** putative Glutathione S-transferase
+
−
** Glutathione S-transferase, N-terminal
+
−
** Glutathione S-transferase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.18 EC-2.5.1.18]
+
** [http://enzyme.expasy.org/EC/4.1.1.25 EC-4.1.1.25]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GLUTATHIONE]][c] '''+''' 1 [[1-CHLORO-24-DINITROBENZENE]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[CL-]][c] '''+''' 1 [[S-24-DINITROPHENYLGLUTATHIONE]][c]
+
** 1 [[TYR]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[TYRAMINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 glutathione[c] '''+''' 1 1-chloro-2,4-dinitrobenzene[c] '''<=>''' 1 H+[c] '''+''' 1 chloride[c] '''+''' 1 2,4-dinitrophenyl-S-glutathione[c]
+
** 1 L-tyrosine[c] '''+''' 1 H+[c] '''=>''' 1 tyramine[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-27_000390]]
+
* Gene: [[Ec-14_004250]]
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Ec-11_002590]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Ec-09_003670]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Ec-00_008380]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Ec-00_008870]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Ec-06_008030]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Ec-24_001030]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
* Gene: [[Ec-18_001510]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Ec-13_002370]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Ec-13_000340]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Ec-06_002520]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Ec-20_001950]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
* Gene: [[Ec-13_002360]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Ec-00_000320]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Ec-27_000400]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Ec-00_008360]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Ec-00_008890]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Ec-00_008370]]
+
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-3581]], (S)-reticuline biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3581 PWY-3581]
 +
** '''3''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6133]], (S)-reticuline biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6133 PWY-6133]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5254]], methanofuran biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5254 PWY-5254]
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7297]], octopamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7297 PWY-7297]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5474]], hydroxycinnamic acid tyramine amides biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5474 PWY-5474]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6802]], salidroside biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6802 PWY-6802]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 85: Line 38:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
+
* RHEA:
−
{{#set: common name=Thioredoxin-like fold}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14345 14345]
−
{{#set: common name=Glutathione S-transferase, C-terminal-like}}
+
* LIGAND-RXN:
−
{{#set: common name=Membrane associated eicosanoid/glutathione metabolism-like domain}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00736 R00736]
−
{{#set: common name=Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein}}
+
* UNIPROT:
−
{{#set: common name=DSBA-like thioredoxin domain}}
+
** [http://www.uniprot.org/uniprot/Q06086 Q06086]
−
{{#set: common name=Glutathione S-transferase (GST)}}
+
** [http://www.uniprot.org/uniprot/P54768 P54768]
−
{{#set: common name=putative Glutathione S-transferase}}
+
** [http://www.uniprot.org/uniprot/P54769 P54769]
−
{{#set: common name=Glutathione S-transferase, N-terminal}}
+
** [http://www.uniprot.org/uniprot/P54770 P54770]
−
{{#set: common name=Glutathione S-transferase}}
+
** [http://www.uniprot.org/uniprot/O82417 O82417]
−
{{#set: ec number=EC-2.5.1.18}}
+
** [http://www.uniprot.org/uniprot/P54771 P54771]
−
{{#set: gene associated=Ec-27_000390|Ec-11_002590|Ec-09_003670|Ec-00_008380|Ec-00_008870|Ec-06_008030|Ec-24_001030|Ec-18_001510|Ec-13_002370|Ec-13_000340|Ec-06_002520|Ec-20_001950|Ec-13_002360|Ec-00_000320|Ec-27_000400|Ec-00_008360|Ec-00_008890|Ec-00_008370}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: in pathway=}}
+
{{#set: common name=Tyrosine Decarboxylase}}
 +
{{#set: ec number=EC-4.1.1.25}}
 +
{{#set: gene associated=Ec-14_004250}}
 +
{{#set: in pathway=PWY-3581|PWY-6133|PWY-5254|PWY-7297|PWY-5474|PWY-6802}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:15, 21 March 2018

Reaction TYROSINE-DECARBOXYLASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Tyrosine Decarboxylase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-tyrosine[c] + 1 H+[c] => 1 tyramine[c] + 1 CO2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-3581, (S)-reticuline biosynthesis I: PWY-3581
    • 3 reactions found over 11 reactions in the full pathway
  • PWY-6133, (S)-reticuline biosynthesis II: PWY-6133
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-5254, methanofuran biosynthesis: PWY-5254
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-7297, octopamine biosynthesis: PWY-7297
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5474, hydroxycinnamic acid tyramine amides biosynthesis: PWY-5474
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-6802, salidroside biosynthesis: PWY-6802
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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