Difference between revisions of "RXN0-2161"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY0-662 PWY0-662] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] == * direction: ** LEFT-TO-RIGHT * common name: ** Seryl-tRNA synthetase ** se...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY0-662 PWY0-662] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
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** PRPP biosynthesis I
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** Seryl-tRNA synthetase
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** serine-tRNA ligase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.1.1.11 EC-6.1.1.11]
 
* Synonym(s):
 
* Synonym(s):
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** 5-phosphoribosyl 1-pyrophosphate biosynthesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''1''' reactions found over '''1''' reactions in the full pathway
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* With identifiers:
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* [[PRPPSYN-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[tRNA-Sec]][c] '''=>''' 1 [[L-seryl-SEC-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
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** 4 associated gene(s):
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* With common name(s):
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*** [[Ec-26_004100]]
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** 1 H+[c] '''+''' 1 ATP[c] '''+''' 1 L-serine[c] '''+''' 1 a tRNAsec[c] '''=>''' 1 an L-seryl-[tRNAsec][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
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*** [[Ec-24_004180]]
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*** [[Ec-06_008650]]
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== Genes associated with this reaction  ==
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*** [[Ec-23_003970]]
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Genes have been associated with this reaction based on different elements listed below.
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** 2 reconstruction source(s) associated:
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* Gene: [[Ec-24_004300]]
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*** [[annotation-esiliculosus_genome]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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*** Assignment: EC-NUMBER
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== Reaction(s) not found ==
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* Gene: [[Ec-08_002360]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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== Pathways  ==
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* [[PWY0-901]], L-selenocysteine biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-901 PWY0-901]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6281 PWY-6281]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* ECOCYC:
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* LIGAND-RXN:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY0-662 PWY0-662]
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** [http://www.genome.jp/dbget-bin/www_bget?R08218 R08218]
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* ARACYC:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY0-662 PWY0-662]
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{{#set: common name=Seryl-tRNA synthetase}}
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{{#set: taxonomic range=TAX-2759}}
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{{#set: common name=serine-tRNA ligase}}
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{{#set: taxonomic range=TAX-2157}}
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{{#set: ec number=EC-6.1.1.11}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: gene associated=Ec-24_004300|Ec-08_002360}}
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{{#set: common name=PRPP biosynthesis I}}
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{{#set: in pathway=PWY0-901|PWY-6281}}
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{{#set: common name=5-phosphoribosyl 1-pyrophosphate biosynthesis}}
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{{#set: reconstruction category=annotation}}
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{{#set: reaction found=1}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: total reaction=1}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: completion rate=100.0}}
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Latest revision as of 19:23, 21 March 2018

Reaction RXN0-2161

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Seryl-tRNA synthetase
    • serine-tRNA ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 1 ATP[c] + 1 L-serine[c] + 1 a tRNAsec[c] => 1 an L-seryl-[tRNAsec][c] + 1 diphosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-901, L-selenocysteine biosynthesis I (bacteria): PWY0-901
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6281, L-selenocysteine biosynthesis II (archaea and eukaryotes): PWY-6281
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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