Difference between revisions of "5.99.1.2-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BTUR2-RXN BTUR2-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** cob(I)yrinic acid a,c-diami...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.2-RXN 5.99.1.2-RXN] == * direction: ** REVERSIBLE * common name: ** DNA topoisomerase ** DNA...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BTUR2-RXN BTUR2-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.2-RXN 5.99.1.2-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** cob(I)yrinic acid a,c-diamide adenosyltransferase
+
** DNA topoisomerase
 +
** DNA topoisomerase type I
 +
** Spo11/DNA topoisomerase VI subunit A
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.17 EC-2.5.1.17]
+
** [http://enzyme.expasy.org/EC/5.99.1.2 EC-5.99.1.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[COBINAMIDE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADENOSYLCOBINAMIDE]][c] '''+''' 1 [[P3I]][c]
+
** 1 [[Negatively-super-coiled-DNAs]][c] '''<=>''' 1 [[Relaxed-DNAs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 cobinamide[c] '''+''' 1 ATP[c] '''=>''' 1 adenosylcobinamide[c] '''+''' 1 PPPi[c]
+
** 1 a negatively supercoiled DNA[c] '''<=>''' 1 a relaxed DNA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-06_010830]]
+
* Gene: [[Ec-24_003570]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-01_011320]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-12_007130]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-15_001600]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-01_011310]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-08_003340]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-03_004560]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-12_007190]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-03_001530]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
 
== Pathways  ==
 
== Pathways  ==
−
* [[COBALSYN-PWY]], adenosylcobalamin salvage from cobinamide I: [http://metacyc.org/META/NEW-IMAGE?object=COBALSYN-PWY COBALSYN-PWY]
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6269]], adenosylcobalamin salvage from cobinamide II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6269 PWY-6269]
 
−
** '''1''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 30: Line 52:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14725 14725]
+
** [http://www.uniprot.org/uniprot/Q7M0H8 Q7M0H8]
−
* LIGAND-RXN:
+
** [http://www.uniprot.org/uniprot/Q07050 Q07050]
−
** [http://www.genome.jp/dbget-bin/www_bget?R07268 R07268]
+
** [http://www.uniprot.org/uniprot/Q9JWZ5 Q9JWZ5]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://www.uniprot.org/uniprot/Q59046 Q59046]
−
{{#set: common name=cob(I)yrinic acid a,c-diamide adenosyltransferase}}
+
** [http://www.uniprot.org/uniprot/Q9PLZ2 Q9PLZ2]
−
{{#set: ec number=EC-2.5.1.17}}
+
** [http://www.uniprot.org/uniprot/P47368 P47368]
−
{{#set: gene associated=Ec-06_010830}}
+
** [http://www.uniprot.org/uniprot/Q9CG80 Q9CG80]
−
{{#set: in pathway=COBALSYN-PWY|PWY-6269}}
+
** [http://www.uniprot.org/uniprot/P43704 P43704]
 +
** [http://www.uniprot.org/uniprot/P43012 P43012]
 +
** [http://www.uniprot.org/uniprot/P0A620 P0A620]
 +
** [http://www.uniprot.org/uniprot/P04786 P04786]
 +
** [http://www.uniprot.org/uniprot/P13099 P13099]
 +
** [http://www.uniprot.org/uniprot/P06612 P06612]
 +
** [http://www.uniprot.org/uniprot/P11387 P11387]
 +
** [http://www.uniprot.org/uniprot/P07799 P07799]
 +
** [http://www.uniprot.org/uniprot/P93119 P93119]
 +
** [http://www.uniprot.org/uniprot/O13463 O13463]
 +
** [http://www.uniprot.org/uniprot/Q94705 Q94705]
 +
** [http://www.uniprot.org/uniprot/Q04750 Q04750]
 +
** [http://www.uniprot.org/uniprot/P14294 P14294]
 +
** [http://www.uniprot.org/uniprot/P30181 P30181]
 +
** [http://www.uniprot.org/uniprot/P34185 P34185]
 +
** [http://www.uniprot.org/uniprot/P30189 P30189]
 +
** [http://www.uniprot.org/uniprot/P40114 P40114]
 +
** [http://www.uniprot.org/uniprot/P41511 P41511]
 +
** [http://www.uniprot.org/uniprot/Q8I3Z9 Q8I3Z9]
 +
** [http://www.uniprot.org/uniprot/Q26024 Q26024]
 +
** [http://www.uniprot.org/uniprot/Q27529 Q27529]
 +
** [http://www.uniprot.org/uniprot/P41512 P41512]
 +
** [http://www.uniprot.org/uniprot/O24307 O24307]
 +
** [http://www.uniprot.org/uniprot/P71196 P71196]
 +
** [http://www.uniprot.org/uniprot/O70157 O70157]
 +
** [http://www.uniprot.org/uniprot/O60126 O60126]
 +
** [http://www.uniprot.org/uniprot/O61660 O61660]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=DNA topoisomerase}}
 +
{{#set: common name=DNA topoisomerase type I}}
 +
{{#set: common name=Spo11/DNA topoisomerase VI subunit A}}
 +
{{#set: ec number=EC-5.99.1.2}}
 +
{{#set: gene associated=Ec-24_003570|Ec-01_011320|Ec-12_007130|Ec-15_001600|Ec-01_011310|Ec-08_003340|Ec-03_004560|Ec-12_007190|Ec-03_001530}}
 +
{{#set: in pathway=}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:27, 21 March 2018

Reaction 5.99.1.2-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • DNA topoisomerase
    • DNA topoisomerase type I
    • Spo11/DNA topoisomerase VI subunit A
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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