Difference between revisions of "PWY-6163"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANSALDOL-RXN TRANSALDOL-RXN] == * direction: ** REVERSIBLE * common name: ** Transaldolase * ec n...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANSALDOL-RXN TRANSALDOL-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163] ==
−
* direction:
+
* taxonomic range:
−
** REVERSIBLE
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3041 TAX-3041]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2763 TAX-2763]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-287987 TAX-287987]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5204 TAX-5204]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2836 TAX-2836]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4762 TAX-4762]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4890 TAX-4890]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5794 TAX-5794]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
−
** Transaldolase
+
** chorismate biosynthesis from 3-dehydroquinate
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.2.1.2 EC-2.2.1.2]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''6''' reactions found over '''6''' reactions in the full pathway
−
** 1 [[D-SEDOHEPTULOSE-7-P]][c] '''+''' 1 [[GAP]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[ERYTHROSE-4P]][c]
+
* [[2.5.1.19-RXN]]
−
* With common name(s):
+
** 1 associated gene(s):
−
** 1 D-sedoheptulose 7-phosphate[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c] '''<=>''' 1 &beta;-D-fructofuranose 6-phosphate[c] '''+''' 1 D-erythrose 4-phosphate[c]
+
*** [[Ec-26_000800]]
−
 
+
** 2 reconstruction source(s) associated:
−
== Genes associated with this reaction  ==
+
*** [[annotation-esiliculosus_genome]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[orthology-aragem]]
−
* Gene: [[Ec-06_003940]]
+
* [[3-DEHYDROQUINATE-DEHYDRATASE-RXN]]
−
** Source: [[annotation-esiliculosus_genome]]
+
** 4 associated gene(s):
−
*** Assignment: AUTOMATED-NAME-MATCH
+
*** [[Ec-07_000550]]
−
* Gene: [[Ec-01_002780]]
+
*** [[Ec-26_004120]]
−
** Source: [[orthology-aragem]]
+
*** [[Ec-14_005400]]
−
** Source: [[orthology-aragem]]
+
*** [[Ec-02_006010]]
−
== Pathways  ==
+
** 2 reconstruction source(s) associated:
−
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
+
*** [[annotation-esiliculosus_genome]]
−
** '''12''' reactions found over '''15''' reactions in the full pathway
+
*** [[orthology-aragem]]
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
+
* [[CHORISMATE-SYNTHASE-RXN]]
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
** 1 associated gene(s):
−
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
+
*** [[Ec-11_005820]]
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
** 2 reconstruction source(s) associated:
−
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
+
*** [[annotation-esiliculosus_genome]]
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
*** [[orthology-aragem]]
−
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
+
* [[RXN-7968]]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** 1 associated gene(s):
−
== Reconstruction information  ==
+
*** [[Ec-02_006010]]
−
* Category: [[orthology]]
+
** 1 reconstruction source(s) associated:
−
** Source: [[orthology-aragem]]
+
*** [[annotation-esiliculosus_genome]]
−
*** Tool: [[pantograph]]
+
* [[SHIKIMATE-5-DEHYDROGENASE-RXN]]
−
* Category: [[annotation]]
+
** 1 associated gene(s):
−
** Source: [[annotation-esiliculosus_genome]]
+
*** [[Ec-02_006010]]
−
*** Tool: [[pathwaytools]]
+
** 2 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
*** [[orthology-aragem]]
 +
* [[SHIKIMATE-KINASE-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Ec-02_005600]]
 +
*** [[Ec-11_000770]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
*** [[orthology-aragem]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* ECOCYC:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17053 17053]
+
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-6163 PWY-6163]
−
* LIGAND-RXN:
+
{{#set: taxonomic range=TAX-2157}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01827 R01827]
+
{{#set: taxonomic range=TAX-3041}}
−
* UNIPROT:
+
{{#set: taxonomic range=TAX-2763}}
−
** [http://www.uniprot.org/uniprot/P17441 P17441]
+
{{#set: taxonomic range=TAX-287987}}
−
** [http://www.uniprot.org/uniprot/P17440 P17440]
+
{{#set: taxonomic range=TAX-5204}}
−
** [http://www.uniprot.org/uniprot/P37837 P37837]
+
{{#set: taxonomic range=TAX-2836}}
−
** [http://www.uniprot.org/uniprot/P45055 P45055]
+
{{#set: taxonomic range=TAX-4762}}
−
** [http://www.uniprot.org/uniprot/Q9JSU1 Q9JSU1]
+
{{#set: taxonomic range=TAX-4890}}
−
** [http://www.uniprot.org/uniprot/P0A867 P0A867]
+
{{#set: taxonomic range=TAX-5794}}
−
** [http://www.uniprot.org/uniprot/Q9PIL5 Q9PIL5]
+
{{#set: taxonomic range=TAX-33090}}
−
** [http://www.uniprot.org/uniprot/Q58370 Q58370]
+
{{#set: taxonomic range=TAX-2}}
−
** [http://www.uniprot.org/uniprot/P34214 P34214]
+
{{#set: common name=chorismate biosynthesis from 3-dehydroquinate}}
−
** [http://www.uniprot.org/uniprot/P0A870 P0A870]
+
{{#set: reaction found=6}}
−
** [http://www.uniprot.org/uniprot/P15019 P15019]
+
{{#set: total reaction=6}}
−
** [http://www.uniprot.org/uniprot/P53228 P53228]
+
{{#set: completion rate=100.0}}
−
** [http://www.uniprot.org/uniprot/P51778 P51778]
+
−
** [http://www.uniprot.org/uniprot/P72797 P72797]
+
−
** [http://www.uniprot.org/uniprot/O04894 O04894]
+
−
** [http://www.uniprot.org/uniprot/P78865 P78865]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=Transaldolase}}
+
−
{{#set: ec number=EC-2.2.1.2}}
+
−
{{#set: gene associated=Ec-06_003940|Ec-01_002780}}
+
−
{{#set: in pathway=P124-PWY|P185-PWY|PWY-5723|PWY-1861|NONOXIPENT-PWY}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:27, 21 March 2018

Pathway PWY-6163

Reaction(s) found

6 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links








Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-6163&oldid=27072"