Difference between revisions of "TRYPTOPHAN--TRNA-LIGASE-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P241-PWY P241-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183988 TAX-...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPTOPHAN--TRNA-LIGASE-RXN TRYPTOPHAN--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P241-PWY P241-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPTOPHAN--TRNA-LIGASE-RXN TRYPTOPHAN--TRNA-LIGASE-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183988 TAX-183988]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-224756 TAX-224756]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183939 TAX-183939]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183925 TAX-183925]
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* common name:
 
* common name:
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** coenzyme B biosynthesis
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** Tryptophan--tRNA ligase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.1.1.2 EC-6.1.1.2]
 
* Synonym(s):
 
* Synonym(s):
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** 7-mecaptoheptanoylthreonine phosphate biosynthesis
 
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** coB biosynthesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''2''' reactions found over '''16''' reactions in the full pathway
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* With identifiers:
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* [[HOMOACONITATE-HYDRATASE-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[TRP-tRNAs]][c] '''=>''' 1 [[Charged-TRP-tRNAs]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Ec-13_001950]]
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** 1 ATP[c] '''+''' 1 L-tryptophan[c] '''+''' 1 H+[c] '''+''' 1 a tRNAtrp[c] '''=>''' 1 an L-tryptophanyl-[tRNAtrp][c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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* [[RXN3O-1983]]
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Genes have been associated with this reaction based on different elements listed below.
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** 0 associated gene:
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* Gene: [[Ec-08_005870]]
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** 1 reconstruction source(s) associated:
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** Source: [[annotation-esiliculosus_genome]]
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*** [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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== Reaction(s) not found ==
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== Pathways  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=HOMOCITRATE-SYNTHASE-RXN HOMOCITRATE-SYNTHASE-RXN]
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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* [http://metacyc.org/META/NEW-IMAGE?object=R211-RXN R211-RXN]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=R212-RXN R212-RXN]
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== Reconstruction information  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=R213-RXN R213-RXN]
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* Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=R214-RXN R214-RXN]
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** Source: [[annotation-esiliculosus_genome]]
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* [http://metacyc.org/META/NEW-IMAGE?object=R215-RXN R215-RXN]
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*** Tool: [[pathwaytools]]
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* [http://metacyc.org/META/NEW-IMAGE?object=R216-RXN R216-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R217-RXN R217-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R218-RXN R218-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R224-RXN R224-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R225-RXN R225-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R226-RXN R226-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R227-RXN R227-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7970 RXN-7970]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-183988}}
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* RHEA:
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{{#set: taxonomic range=TAX-224756}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24080 24080]
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{{#set: taxonomic range=TAX-183939}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-183925}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03664 R03664]
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{{#set: common name=coenzyme B biosynthesis}}
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* UNIPROT:
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{{#set: common name=7-mecaptoheptanoylthreonine phosphate biosynthesis|coB biosynthesis}}
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** [http://www.uniprot.org/uniprot/P23381 P23381]
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{{#set: reaction found=2}}
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** [http://www.uniprot.org/uniprot/Q9ZD76 Q9ZD76]
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{{#set: total reaction=16}}
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** [http://www.uniprot.org/uniprot/O84589 O84589]
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{{#set: completion rate=13.0}}
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** [http://www.uniprot.org/uniprot/Q9PIB4 Q9PIB4]
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** [http://www.uniprot.org/uniprot/Q9CJD1 Q9CJD1]
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** [http://www.uniprot.org/uniprot/P43835 P43835]
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** [http://www.uniprot.org/uniprot/Q9Z7A4 Q9Z7A4]
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** [http://www.uniprot.org/uniprot/Q9WYW2 Q9WYW2]
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** [http://www.uniprot.org/uniprot/O26352 O26352]
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** [http://www.uniprot.org/uniprot/O51038 O51038]
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** [http://www.uniprot.org/uniprot/Q9ZJX4 Q9ZJX4]
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** [http://www.uniprot.org/uniprot/Q9JTQ0 Q9JTQ0]
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** [http://www.uniprot.org/uniprot/Q58810 Q58810]
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** [http://www.uniprot.org/uniprot/O83640 O83640]
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** [http://www.uniprot.org/uniprot/P67590 P67590]
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** [http://www.uniprot.org/uniprot/O67115 O67115]
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** [http://www.uniprot.org/uniprot/P47372 P47372]
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** [http://www.uniprot.org/uniprot/P32921 P32921]
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** [http://www.uniprot.org/uniprot/Q12109 Q12109]
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** [http://www.uniprot.org/uniprot/Q49901 Q49901]
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** [http://www.uniprot.org/uniprot/P75510 P75510]
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** [http://www.uniprot.org/uniprot/O42875 O42875]
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** [http://www.uniprot.org/uniprot/O96771 O96771]
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** [http://www.uniprot.org/uniprot/P17248 P17248]
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** [http://www.uniprot.org/uniprot/P21656 P21656]
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** [http://www.uniprot.org/uniprot/P04803 P04803]
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** [http://www.uniprot.org/uniprot/P00954 P00954]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Tryptophan--tRNA ligase}}
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{{#set: ec number=EC-6.1.1.2}}
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{{#set: gene associated=Ec-08_005870}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:29, 21 March 2018

Reaction TRYPTOPHAN--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Tryptophan--tRNA ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 L-tryptophan[c] + 1 H+[c] + 1 a tRNAtrp[c] => 1 an L-tryptophanyl-[tRNAtrp][c] + 1 AMP[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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