Difference between revisions of "Ec-12 005560"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PANTOTHENATE-KIN-RXN PANTOTHENATE-KIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** panto...")
(Created page with "Category:Gene == Gene Ec-12_005560 == * left end position: ** 5059120 * transcription direction: ** POSITIVE * right end position: ** 5065454 * centisome position: ** 60.6...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PANTOTHENATE-KIN-RXN PANTOTHENATE-KIN-RXN] ==
+
== Gene Ec-12_005560 ==
−
* direction:
+
* left end position:
−
** LEFT-TO-RIGHT
+
** 5059120
−
* common name:
+
* transcription direction:
−
** pantothenate kinase
+
** POSITIVE
−
* ec number:
+
* right end position:
−
** [http://enzyme.expasy.org/EC/2.7.1.33 EC-2.7.1.33]
+
** 5065454
 +
* centisome position:
 +
** 60.68964   
 
* Synonym(s):
 
* Synonym(s):
 +
** Esi_0081_0028
 +
** Esi0081_0028
 +
** BCAT3
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[BRANCHED-CHAINAMINOTRANSFERILEU-RXN]]
−
** 1 [[PANTOTHENATE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[4-P-PANTOTHENATE]][c] '''+''' 1 [[PROTON]][c]
+
−
* With common name(s):
+
−
** 1 (R)-pantothenate[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 (R)-4'-phosphopantothenate[c] '''+''' 1 H+[c]
+
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* Gene: [[Ec-11_006230]]
+
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Assignment: GO-TERM
+
*** Assignment: go-term
−
* Gene: [[Ec-01_003730]]
+
* Reaction: [[BRANCHED-CHAINAMINOTRANSFERLEU-RXN]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Assignment: GO-TERM
+
*** Assignment: go-term
−
== Pathways  ==
+
* Reaction: [[BRANCHED-CHAINAMINOTRANSFERVAL-RXN]]
−
* [[PANTO-PWY]], phosphopantothenate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PANTO-PWY PANTO-PWY]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-3961]], phosphopantothenate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3961 PWY-3961]
+
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
−
* [[COA-PWY-1]], coenzyme A biosynthesis II (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=COA-PWY-1 COA-PWY-1]
+
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[annotation]]
+
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: go-term
 +
== Pathways associated ==
 +
* [[PWY-5076]]
 +
* [[ILEUSYN-PWY]]
 +
* [[ILEUDEG-PWY]]
 +
* [[LEU-DEG2-PWY]]
 +
* [[VALDEG-PWY]]
 +
* [[PWY-5057]]
 +
* [[VALSYN-PWY]]
 +
* [[PWY-7767]]
 +
* [[PWY-5108]]
 +
* [[LEUSYN-PWY]]
 +
* [[PWY-5103]]
 +
* [[PWY-5101]]
 +
* [[PWY-5078]]
 +
* [[ALANINE-VALINESYN-PWY]]
 +
* [[PWY-5104]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: left end position=5059120}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16373 16373]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: right end position=5065454}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03018 R03018]
+
{{#set: centisome position=60.68964    }}
−
* UNIPROT:
+
{{#set: common name=Esi_0081_0028|Esi0081_0028|BCAT3}}
−
** [http://www.uniprot.org/uniprot/P0A6I3 P0A6I3]
+
{{#set: reaction associated=BRANCHED-CHAINAMINOTRANSFERILEU-RXN|BRANCHED-CHAINAMINOTRANSFERLEU-RXN|BRANCHED-CHAINAMINOTRANSFERVAL-RXN}}
−
** [http://www.uniprot.org/uniprot/Q9CFM3 Q9CFM3]
+
{{#set: pathway associated=PWY-5076|ILEUSYN-PWY|ILEUDEG-PWY|LEU-DEG2-PWY|VALDEG-PWY|PWY-5057|VALSYN-PWY|PWY-7767|PWY-5108|LEUSYN-PWY|PWY-5103|PWY-5101|PWY-5078|ALANINE-VALINESYN-PWY|PWY-5104}}
−
** [http://www.uniprot.org/uniprot/P44793 P44793]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=pantothenate kinase}}
+
−
{{#set: ec number=EC-2.7.1.33}}
+
−
{{#set: gene associated=Ec-11_006230|Ec-01_003730}}
+
−
{{#set: in pathway=PANTO-PWY|PWY-3961|COA-PWY-1}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Latest revision as of 19:31, 21 March 2018

Gene Ec-12_005560

  • left end position:
    • 5059120
  • transcription direction:
    • POSITIVE
  • right end position:
    • 5065454
  • centisome position:
    • 60.68964
  • Synonym(s):
    • Esi_0081_0028
    • Esi0081_0028
    • BCAT3

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-12_005560&oldid=27461"