Difference between revisions of "P124-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PMPOXI-RXN PMPOXI-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** pyridoxamine-phosphate ox...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PMPOXI-RXN PMPOXI-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
 
* common name:
 
* common name:
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** pyridoxamine-phosphate oxidase
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** Bifidobacterium shunt
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* ec number:
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** [http://enzyme.expasy.org/EC/1.4.3.5 EC-1.4.3.5]
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* Synonym(s):
 
* Synonym(s):
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** Bifidum fermentation
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** Bifidum pathway
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** fructose-6-phosphate pathway
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** Bifidum shunt
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** glucose fermentation to lactate (Bifidobacteria)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''12''' reactions found over '''15''' reactions in the full pathway
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** 1 [[WATER]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PYRIDOXAMINE-5P]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[PYRIDOXAL_PHOSPHATE]][c] '''+''' 1 [[AMMONIUM]][c]
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* [[1TRANSKETO-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 H2O[c] '''+''' 1 oxygen[c] '''+''' 1 pyridoxamine 5'-phosphate[c] '''=>''' 1 hydrogen peroxide[c] '''+''' 1 pyridoxal 5'-phosphate[c] '''+''' 1 ammonium[c]
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*** [[Ec-20_002600]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-esiliculosus_genome]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-aragem]]
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* Gene: [[Ec-09_002030]]
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* [[2PGADEHYDRAT-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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** 3 associated gene(s):
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*** Assignment: GO-TERM
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*** [[Ec-14_005400]]
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* Gene: [[Ec-01_000340]]
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*** [[Ec-27_004000]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-26_004120]]
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*** Assignment: GO-TERM
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** 2 reconstruction source(s) associated:
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* Gene: [[Ec-10_006030]]
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*** [[annotation-esiliculosus_genome]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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*** Assignment: GO-TERM
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* [[3PGAREARR-RXN]]
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== Pathways  ==
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** 7 associated gene(s):
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* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204]
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*** [[Ec-27_000330]]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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*** [[Ec-24_002670]]
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* [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I: [http://metacyc.org/META/NEW-IMAGE?object=PLPSAL-PWY PLPSAL-PWY]
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*** [[Ec-10_005410]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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*** [[Ec-03_002160]]
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== Reconstruction information  ==
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*** [[Ec-03_002170]]
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* Category: [[annotation]]
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*** [[Ec-01_000980]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-06_009930]]
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*** Tool: [[pathwaytools]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[GAPOXNPHOSPHN-RXN]]
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** 4 associated gene(s):
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*** [[Ec-25_003550]]
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*** [[Ec-19_001850]]
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*** [[Ec-19_003020]]
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*** [[Ec-08_000500]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[GLUCOKIN-RXN]]
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** 1 associated gene(s):
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*** [[Ec-27_005030]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[L-LACTATE-DEHYDROGENASE-RXN]]
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** 1 associated gene(s):
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*** [[Ec-12_006780]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[PEPDEPHOS-RXN]]
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** 3 associated gene(s):
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*** [[Ec-26_004170]]
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*** [[Ec-06_006860]]
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*** [[Ec-12_000950]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[PGLUCISOM-RXN]]
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** 3 associated gene(s):
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*** [[Ec-24_002470]]
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*** [[Ec-13_003530]]
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*** [[Ec-13_003810]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[PHOSGLYPHOS-RXN]]
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** 6 associated gene(s):
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*** [[Ec-12_004530]]
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*** [[Ec-21_005710]]
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*** [[Ec-21_004220]]
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*** [[Ec-08_002400]]
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*** [[Ec-12_004550]]
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*** [[Ec-01_001350]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RIB5PISOM-RXN]]
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** 1 associated gene(s):
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*** [[Ec-08_003540]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RIBULP3EPIM-RXN]]
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** 2 associated gene(s):
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*** [[Ec-07_002390]]
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*** [[Ec-27_003930]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[TRANSALDOL-RXN]]
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** 2 associated gene(s):
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*** [[Ec-06_003940]]
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*** [[Ec-01_002780]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=ACETATEKIN-RXN ACETATEKIN-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=FRUCTOSE-6-PHOSPHATE-PHOSPHOKETOLASE-RXN FRUCTOSE-6-PHOSPHATE-PHOSPHOKETOLASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOKETOLASE-RXN PHOSPHOKETOLASE-RXN]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-201174}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15817 15817]
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{{#set: common name=Bifidobacterium shunt}}
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* LIGAND-RXN:
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{{#set: common name=Bifidum fermentation|Bifidum pathway|fructose-6-phosphate pathway|Bifidum shunt|glucose fermentation to lactate (Bifidobacteria)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00277 R00277]
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{{#set: reaction found=12}}
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* UNIPROT:
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{{#set: total reaction=15}}
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** [http://www.uniprot.org/uniprot/P0AFI7 P0AFI7]
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{{#set: completion rate=80.0}}
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** [http://www.uniprot.org/uniprot/Q9JTZ1 Q9JTZ1]
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** [http://www.uniprot.org/uniprot/P44909 P44909]
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** [http://www.uniprot.org/uniprot/P38075 P38075]
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** [http://www.uniprot.org/uniprot/P74211 P74211]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=pyridoxamine-phosphate oxidase}}
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{{#set: ec number=EC-1.4.3.5}}
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{{#set: gene associated=Ec-09_002030|Ec-01_000340|Ec-10_006030}}
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{{#set: in pathway=PWY-7204|PLPSAL-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 19:32, 21 March 2018

Pathway P124-PWY

  • taxonomic range:
  • common name:
    • Bifidobacterium shunt
  • Synonym(s):
    • Bifidum fermentation
    • Bifidum pathway
    • fructose-6-phosphate pathway
    • Bifidum shunt
    • glucose fermentation to lactate (Bifidobacteria)

Reaction(s) found

12 reactions found over 15 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=P124-PWY&oldid=27574"