Difference between revisions of "RXN-16135"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BETAGALACTOSID-RXN BETAGALACTOSID-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** β-ga...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16135 RXN-16135] == * direction: ** LEFT-TO-RIGHT * common name: ** ClpP/crotonase-like domain...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BETAGALACTOSID-RXN BETAGALACTOSID-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16135 RXN-16135] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** β-galactosidase
+
** ClpP/crotonase-like domain
−
** Glycoside hydrolase-type carbohydrate-binding, subgroup
+
** Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ
−
** Beta-galactosidase, family GH2
+
** enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.2.1.108 EC-3.2.1.108]
+
** [http://enzyme.expasy.org/EC/4.2.1.17 EC-4.2.1.17]
−
** [http://enzyme.expasy.org/EC/3.2.1.23 EC-3.2.1.23]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-15972]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Glucopyranose]][c] '''+''' 1 [[GALACTOSE]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[CPD-17386]][c] '''=>''' 1 [[CPD-17387]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 lactose[c] '''+''' 1 H2O[c] '''=>''' 1 D-glucopyranose[c] '''+''' 1 β-D-galactose[c]
+
** 1 H2O[c] '''+''' 1 (2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA[c] '''=>''' 1 (3S)-hydroxy-(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-06_001410]]
+
* Gene: [[Ec-16_003560]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[Ec-12_007000]]
+
* Gene: [[Ec-14_006530]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-06_001380]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-16_001250]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[BGALACT-PWY]], lactose degradation III: [http://metacyc.org/META/NEW-IMAGE?object=BGALACT-PWY BGALACT-PWY]
+
* [[PWY-7606]], docosahexaenoate biosynthesis III (6-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7606 PWY-7606]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''14''' reactions found over '''14''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 34: Line 39:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10076 10076]
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28659 28659]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01100 R01100]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q29522 Q29522]
 
−
** [http://www.uniprot.org/uniprot/Q29521 Q29521]
 
−
** [http://www.uniprot.org/uniprot/Q29519 Q29519]
 
−
** [http://www.uniprot.org/uniprot/Q29518 Q29518]
 
−
** [http://www.uniprot.org/uniprot/P09849 P09849]
 
−
** [http://www.uniprot.org/uniprot/P09848 P09848]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=β-galactosidase}}
+
{{#set: common name=ClpP/crotonase-like domain}}
−
{{#set: common name=Glycoside hydrolase-type carbohydrate-binding, subgroup}}
+
{{#set: common name=Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ}}
−
{{#set: common name=Beta-galactosidase, family GH2}}
+
{{#set: common name=enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase}}
−
{{#set: ec number=EC-3.2.1.108}}
+
{{#set: ec number=EC-4.2.1.17}}
−
{{#set: ec number=EC-3.2.1.23}}
+
{{#set: gene associated=Ec-16_003560|Ec-14_006530|Ec-06_001380|Ec-16_001250}}
−
{{#set: gene associated=Ec-06_001410|Ec-12_007000}}
+
{{#set: in pathway=PWY-7606}}
−
{{#set: in pathway=BGALACT-PWY}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:38, 21 March 2018

Reaction RXN-16135

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ClpP/crotonase-like domain
    • Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ
    • enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 (2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA[c] => 1 (3S)-hydroxy-(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7606, docosahexaenoate biosynthesis III (6-desaturase, mammals): PWY-7606
    • 14 reactions found over 14 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-16135&oldid=28332"