Difference between revisions of "Ec-09 004260"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE--TRNA-LIGASE-RXN PHENYLALANINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * c...")
(Created page with "Category:Gene == Gene Ec-09_004260 == * left end position: ** 4802691 * transcription direction: ** POSITIVE * right end position: ** 4808782 * centisome position: ** 85.5...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE--TRNA-LIGASE-RXN PHENYLALANINE--TRNA-LIGASE-RXN] ==
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== Gene Ec-09_004260 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 4802691
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* common name:
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* transcription direction:
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** Phenylalanine--tRNA ligase
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** POSITIVE
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** tRNA-binding arm
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* right end position:
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** phenylalanine-tRNA ligase
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** 4808782
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/6.1.1.20 EC-6.1.1.20]
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** 85.56126   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0049_0112
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** Esi0049_0112
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[4.2.2.10-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[PHE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PHE-tRNAs]][c] '''=>''' 1 [[Charged-PHE-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
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* With common name(s):
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** 1 ATP[c] '''+''' 1 L-phenylalanine[c] '''+''' 1 H+[c] '''+''' 1 a tRNAphe[c] '''=>''' 1 an L-phenylalanyl-[tRNAphe][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-15_003330]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-06_008260]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-02_005310]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-27_001900]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
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== Pathways  ==
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* Reaction: [[RXN-14897]]
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-7243]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=4802691}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19413 19413]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=4808782}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03660 R03660]
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{{#set: centisome position=85.56126    }}
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* UNIPROT:
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{{#set: common name=Esi_0049_0112|Esi0049_0112}}
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** [http://www.uniprot.org/uniprot/P94283 P94283]
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{{#set: reaction associated=4.2.2.10-RXN|RXN-14897}}
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** [http://www.uniprot.org/uniprot/Q9ZDB4 Q9ZDB4]
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{{#set: pathway associated=PWY-7243}}
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** [http://www.uniprot.org/uniprot/Q9WZS9 Q9WZS9]
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** [http://www.uniprot.org/uniprot/Q9PP34 Q9PP34]
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** [http://www.uniprot.org/uniprot/P56145 P56145]
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** [http://www.uniprot.org/uniprot/O67620 O67620]
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** [http://www.uniprot.org/uniprot/O73984 O73984]
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** [http://www.uniprot.org/uniprot/Q9Z6R6 Q9Z6R6]
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** [http://www.uniprot.org/uniprot/Q58508 Q58508]
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** [http://www.uniprot.org/uniprot/P56146 P56146]
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** [http://www.uniprot.org/uniprot/O27545 O27545]
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** [http://www.uniprot.org/uniprot/O26837 O26837]
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** [http://www.uniprot.org/uniprot/O58391 O58391]
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** [http://www.uniprot.org/uniprot/O83938 O83938]
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** [http://www.uniprot.org/uniprot/P47436 P47436]
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** [http://www.uniprot.org/uniprot/O67087 O67087]
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** [http://www.uniprot.org/uniprot/O83059 O83059]
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** [http://www.uniprot.org/uniprot/O84843 O84843]
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** [http://www.uniprot.org/uniprot/Q9UYX3 Q9UYX3]
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** [http://www.uniprot.org/uniprot/Q9Z7W0 Q9Z7W0]
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** [http://www.uniprot.org/uniprot/Q9PJR8 Q9PJR8]
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** [http://www.uniprot.org/uniprot/P47437 P47437]
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** [http://www.uniprot.org/uniprot/Q9ZKF9 Q9ZKF9]
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** [http://www.uniprot.org/uniprot/Q9UYX2 Q9UYX2]
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** [http://www.uniprot.org/uniprot/Q9ZKF8 Q9ZKF8]
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** [http://www.uniprot.org/uniprot/Q9JR76 Q9JR76]
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** [http://www.uniprot.org/uniprot/Q57911 Q57911]
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** [http://www.uniprot.org/uniprot/P43819 P43819]
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** [http://www.uniprot.org/uniprot/P94282 P94282]
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** [http://www.uniprot.org/uniprot/O84481 O84481]
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** [http://www.uniprot.org/uniprot/Q9ZDB5 Q9ZDB5]
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** [http://www.uniprot.org/uniprot/Q9WZS8 Q9WZS8]
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** [http://www.uniprot.org/uniprot/Q9RRX8 Q9RRX8]
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** [http://www.uniprot.org/uniprot/Q9PP35 Q9PP35]
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** [http://www.uniprot.org/uniprot/P43820 P43820]
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** [http://www.uniprot.org/uniprot/Q46107 Q46107]
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** [http://www.uniprot.org/uniprot/P15434 P15434]
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** [http://www.uniprot.org/uniprot/Q5SGX1 Q5SGX1]
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** [http://www.uniprot.org/uniprot/P37984 P37984]
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** [http://www.uniprot.org/uniprot/P51346 P51346]
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** [http://www.uniprot.org/uniprot/P75563 P75563]
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** [http://www.uniprot.org/uniprot/P75564 P75564]
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** [http://www.uniprot.org/uniprot/Q55187 Q55187]
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** [http://www.uniprot.org/uniprot/P95960 P95960]
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** [http://www.uniprot.org/uniprot/P95961 P95961]
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** [http://www.uniprot.org/uniprot/Q49032 Q49032]
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** [http://www.uniprot.org/uniprot/P08312 P08312]
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** [http://www.uniprot.org/uniprot/P07395 P07395]
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** [http://www.uniprot.org/uniprot/O42870 O42870]
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** [http://www.uniprot.org/uniprot/O13432 O13432]
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** [http://www.uniprot.org/uniprot/Q9GYS8 Q9GYS8]
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** [http://www.uniprot.org/uniprot/O42849 O42849]
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** [http://www.uniprot.org/uniprot/P17921 P17921]
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** [http://www.uniprot.org/uniprot/P17922 P17922]
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** [http://www.uniprot.org/uniprot/P15625 P15625]
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** [http://www.uniprot.org/uniprot/P08425 P08425]
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** [http://www.uniprot.org/uniprot/P15624 P15624]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Phenylalanine--tRNA ligase}}
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{{#set: common name=tRNA-binding arm}}
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{{#set: common name=phenylalanine-tRNA ligase}}
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{{#set: ec number=EC-6.1.1.20}}
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{{#set: gene associated=Ec-15_003330|Ec-06_008260|Ec-02_005310|Ec-27_001900}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 19:41, 21 March 2018

Gene Ec-09_004260

  • left end position:
    • 4802691
  • transcription direction:
    • POSITIVE
  • right end position:
    • 4808782
  • centisome position:
    • 85.56126
  • Synonym(s):
    • Esi_0049_0112
    • Esi0049_0112

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-09_004260&oldid=28658"