Difference between revisions of "Ec-08 004480"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1126 RXN-1126] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/6....")
(Created page with "Category:Gene == Gene Ec-08_004480 == * left end position: ** 4206177 * transcription direction: ** NEGATIVE * right end position: ** 4228639 * centisome position: ** 62.8...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1126 RXN-1126] ==
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== Gene Ec-08_004480 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 4206177
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/6.2.1.12 EC-6.2.1.12]
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** NEGATIVE
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* right end position:
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** 4228639
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* centisome position:
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** 62.806267   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0078_0096
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** Esi0078_0096
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[VALINE--TRNA-LIGASE-RXN]]
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** 1 [[CPD-676]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[CAFFEOYL-COA]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 trans-caffeate[c] '''+''' 1 coenzyme A[c] '''+''' 1 ATP[c] '''=>''' 1 trans-caffeoyl-CoA[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
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== Pathways associated ==
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* [[TRNA-CHARGING-PWY]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-10_001480]]
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-04_001280]]
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** Source: [[orthology-aragem]]
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== Pathways ==
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* [[PWY-7398]], coumarins biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7398 PWY-7398]
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** '''3''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
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** '''6''' reactions found over '''19''' reactions in the full pathway
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* [[PWY-6673]], caffeoylglucarate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6673 PWY-6673]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: left end position=4206177}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01943 R01943]
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{{#set: transcription direction=NEGATIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=4228639}}
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{{#set: ec number=EC-6.2.1.12}}
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{{#set: centisome position=62.806267    }}
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{{#set: gene associated=Ec-10_001480|Ec-04_001280}}
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{{#set: common name=Esi_0078_0096|Esi0078_0096}}
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{{#set: in pathway=PWY-7398|PWY-1121|PWY-6673}}
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{{#set: reaction associated=VALINE--TRNA-LIGASE-RXN}}
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{{#set: reconstruction category=orthology}}
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{{#set: pathway associated=TRNA-CHARGING-PWY}}
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{{#set: reconstruction source=orthology-aragem}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 20:43, 21 March 2018

Gene Ec-08_004480

  • left end position:
    • 4206177
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 4228639
  • centisome position:
    • 62.806267
  • Synonym(s):
    • Esi_0078_0096
    • Esi0078_0096

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-08_004480&oldid=28975"