Difference between revisions of "PYRIMSYN3-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.1.1.16-RXN 5.1.1.16-RXN] == * direction: ** REVERSIBLE * common name: ** Tryptophan synthase beta...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIMSYN3-RXN PYRIMSYN3-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.1.1.16-RXN 5.1.1.16-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIMSYN3-RXN PYRIMSYN3-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
−
* common name:
+
−
** Tryptophan synthase beta subunit-like PLP-dependent enzyme
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/5.1.1.16 EC-5.1.1.16]
+
** [http://enzyme.expasy.org/EC/2.7.4.7 EC-2.7.4.7]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Protein-L-serines]][c] '''<=>''' 1 [[Protein-D-serines]][c]
+
** 1 [[AMINO-HYDROXYMETHYL-METHYL-PYR-P]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a [protein]-L-serine[c] '''<=>''' 1 a [protein]-D-serine[c]
+
** 1 4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 4-amino-2-methyl-5-(diphosphomethyl)pyrimidine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-24_004010]]
+
* Gene: [[Ec-06_006870]]
−
** Source: [[annotation-esiliculosus_genome]]
+
** Source: [[orthology-aragem]]
−
*** Assignment: EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6890]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6890 PWY-6890]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6910]], hydroxymethylpyrimidine salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6910 PWY-6910]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7356]], thiamine salvage IV (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7356 PWY-7356]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7357]], thiamine formation from pyrithiamine and oxythiamine (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7357 PWY-7357]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[annotation]]
+
* Category: [[orthology]]
−
** Source: [[annotation-esiliculosus_genome]]
+
** Source: [[orthology-aragem]]
−
*** Tool: [[pathwaytools]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19893 19893]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05175 R05175]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04509 R04509]
−
{{#set: direction=REVERSIBLE}}
+
* UNIPROT:
−
{{#set: common name=Tryptophan synthase beta subunit-like PLP-dependent enzyme}}
+
** [http://www.uniprot.org/uniprot/Q9JTE1 Q9JTE1]
−
{{#set: ec number=EC-5.1.1.16}}
+
** [http://www.uniprot.org/uniprot/Q9PNL2 Q9PNL2]
−
{{#set: gene associated=Ec-24_004010}}
+
** [http://www.uniprot.org/uniprot/Q9CI79 Q9CI79]
−
{{#set: in pathway=}}
+
** [http://www.uniprot.org/uniprot/Q9CG47 Q9CG47]
−
{{#set: reconstruction category=annotation}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
{{#set: ec number=EC-2.7.4.7}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: gene associated=Ec-06_006870}}
 +
{{#set: in pathway=PWY-7282|PWY-6890|PWY-6910|PWY-7356|PWY-7357}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 19:56, 21 March 2018

Reaction PYRIMSYN3-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7282, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): PWY-7282
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-6890, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis: PWY-6890
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6910, hydroxymethylpyrimidine salvage: PWY-6910
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7356, thiamine salvage IV (yeast): PWY-7356
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7357, thiamine formation from pyrithiamine and oxythiamine (yeast): PWY-7357
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PYRIMSYN3-RXN&oldid=30386"