Difference between revisions of "RXN-9658"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15889 RXN-15889] == * direction: ** LEFT-TO-RIGHT * common name: ** holo-[acyl-carrier-protein]...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15889 RXN-15889] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971] ==
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* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
−
** holo-[acyl-carrier-protein] synthase
+
** palmitate biosynthesis II (bacteria and plants)
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.7.8.7 EC-2.7.8.7]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** palmitic acid biosynthesis
 +
** de novo lipogenesis
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''28''' reactions found over '''31''' reactions in the full pathway
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** 1 [[CO-A]][c] '''+''' 1 [[Apo-EntF]][c] '''=>''' 1 [[Holo-EntF]][c] '''+''' 1 [[3-5-ADP]][c] '''+''' 1 [[PROTON]][c]
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* [[4.2.1.58-RXN]]
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* With common name(s):
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** 0 associated gene:
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** 1 coenzyme A[c] '''+''' 1 an apo-[EntF peptidyl-carrier protein][c] '''=>''' 1 a holo-[EntF peptidyl-carrier protein][c] '''+''' 1 adenosine 3',5'-bisphosphate[c] '''+''' 1 H+[c]
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** 1 reconstruction source(s) associated:
−
 
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*** [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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* [[4.2.1.61-RXN]]
−
Genes have been associated with this reaction based on different elements listed below.
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** 0 associated gene:
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* [[Ec-01_000130]]
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** 1 reconstruction source(s) associated:
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** ESILICULOSUS_GENOME
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*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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***GO-TERM
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* [[RXN-16393]]
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* [[Ec-06_004620]]
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** 4 associated gene(s):
−
** ESILICULOSUS_GENOME
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*** [[Ec-03_003710]]
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***GO-TERM
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*** [[Ec-01_001560]]
−
== Pathways  ==
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*** [[Ec-12_008720]]
−
* [[ENTBACSYN-PWY]], enterobactin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ENTBACSYN-PWY ENTBACSYN-PWY]
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*** [[Ec-02_006430]]
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** '''3''' reactions found over '''10''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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== Reconstruction information  ==
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*** [[annotation-esiliculosus_genome]]
−
* [[annotation]]:
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* [[RXN-9514]]
−
** [[pathwaytools]]:
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** 1 associated gene(s):
−
*** [[esiliculosus_genome]]
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*** [[Ec-01_007100]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9516]]
 +
** 4 associated gene(s):
 +
*** [[Ec-27_003480]]
 +
*** [[Ec-27_002090]]
 +
*** [[Ec-12_000650]]
 +
*** [[Ec-12_000640]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
*** [[orthology-aragem]]
 +
* [[RXN-9518]]
 +
** 1 associated gene(s):
 +
*** [[Ec-01_007100]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9523]]
 +
** 4 associated gene(s):
 +
*** [[Ec-27_002090]]
 +
*** [[Ec-12_000640]]
 +
*** [[Ec-12_000650]]
 +
*** [[Ec-27_003480]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
*** [[orthology-aragem]]
 +
* [[RXN-9524]]
 +
** 1 associated gene(s):
 +
*** [[Ec-01_007100]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9527]]
 +
** 4 associated gene(s):
 +
*** [[Ec-12_000640]]
 +
*** [[Ec-27_003480]]
 +
*** [[Ec-12_000650]]
 +
*** [[Ec-27_002090]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
*** [[orthology-aragem]]
 +
* [[RXN-9528]]
 +
** 1 associated gene(s):
 +
*** [[Ec-01_007100]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9531]]
 +
** 4 associated gene(s):
 +
*** [[Ec-27_002090]]
 +
*** [[Ec-27_003480]]
 +
*** [[Ec-12_000650]]
 +
*** [[Ec-12_000640]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
*** [[orthology-aragem]]
 +
* [[RXN-9532]]
 +
** 1 associated gene(s):
 +
*** [[Ec-01_007100]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9533]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
 +
* [[RXN-9535]]
 +
** 4 associated gene(s):
 +
*** [[Ec-27_002090]]
 +
*** [[Ec-12_000650]]
 +
*** [[Ec-27_003480]]
 +
*** [[Ec-12_000640]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
*** [[orthology-aragem]]
 +
* [[RXN-9536]]
 +
** 1 associated gene(s):
 +
*** [[Ec-01_007100]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9537]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
 +
* [[RXN-9539]]
 +
** 4 associated gene(s):
 +
*** [[Ec-12_000650]]
 +
*** [[Ec-12_000640]]
 +
*** [[Ec-27_002090]]
 +
*** [[Ec-27_003480]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
*** [[orthology-aragem]]
 +
* [[RXN-9540]]
 +
** 1 associated gene(s):
 +
*** [[Ec-01_007100]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9549]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
 +
* [[RXN-9623]]
 +
** 4 associated gene(s):
 +
*** [[Ec-01_001560]]
 +
*** [[Ec-02_006430]]
 +
*** [[Ec-03_003710]]
 +
*** [[Ec-12_008720]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
*** [[orthology-aragem]]
 +
* [[RXN-9655]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
 +
* [[RXN-9657]]
 +
** 1 associated gene(s):
 +
*** [[Ec-27_002470]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9658]]
 +
** 1 associated gene(s):
 +
*** [[Ec-27_002470]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9659]]
 +
** 1 associated gene(s):
 +
*** [[Ec-27_002470]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9660]]
 +
** 1 associated gene(s):
 +
*** [[Ec-27_002470]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9661]]
 +
** 1 associated gene(s):
 +
*** [[Ec-27_002470]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9662]]
 +
** 1 associated gene(s):
 +
*** [[Ec-27_002470]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-9663]]
 +
** 1 associated gene(s):
 +
*** [[Ec-27_002470]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=3.1.2.21-RXN 3.1.2.21-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.59-RXN 4.2.1.59-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9520 RXN-9520]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* ECOCYC:
−
{{#set: common name=holo-[acyl-carrier-protein] synthase}}
+
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-5971 PWY-5971]
−
{{#set: ec number=EC-2.7.8.7}}
+
{{#set: taxonomic range=TAX-33090}}
−
{{#set: gene associated=Ec-01_000130|Ec-06_004620}}
+
{{#set: taxonomic range=TAX-2}}
−
{{#set: in pathway=ENTBACSYN-PWY}}
+
{{#set: common name=palmitate biosynthesis II (bacteria and plants)}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: common name=palmitic acid biosynthesis|de novo lipogenesis}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reaction found=28}}
−
{{#set: reconstruction source=esiliculosus_genome}}
+
{{#set: total reaction=31}}
 +
{{#set: completion rate=90.0}}

Revision as of 21:03, 17 March 2018

Pathway PWY-5971

  • taxonomic range:
  • common name:
    • palmitate biosynthesis II (bacteria and plants)
  • Synonym(s):
    • palmitic acid biosynthesis
    • de novo lipogenesis

Reaction(s) found

28 reactions found over 31 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-9658&oldid=11419"